Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j19
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1683 - 39134826-39135664,39136202-39136278,39136391-391364...    28   2.1  
11_03_0200 + 11560278-11560549,11561124-11561205,11561238-115612...    27   3.7  
05_04_0439 + 21260445-21260790,21264038-21264786                       27   3.7  
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    26   6.4  
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460           26   6.4  
05_01_0151 - 1001851-1001898,1002227-1002311,1003064-1003225,100...    26   6.4  
01_06_1749 - 39636951-39638102                                         26   8.5  
01_01_0433 + 3282195-3285185                                           26   8.5  

>01_06_1683 -
           39134826-39135664,39136202-39136278,39136391-39136441,
           39136581-39136654,39136782-39136870,39137152-39137234,
           39138067-39138241,39138348-39138501
          Length = 513

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 251 LSHPSNRNALLLHGRNGQGGGAY 183
           L H +  N+++ +G NG GGG Y
Sbjct: 405 LEHSTGSNSVVYNGDNGGGGGGY 427


>11_03_0200 +
           11560278-11560549,11561124-11561205,11561238-11561297,
           11565714-11565801,11565935-11565942,11566431-11566522,
           11567269-11567275
          Length = 202

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 155 YQ*SILIYGIGLLCDSCLLRK 93
           Y   + IYG+GLL D  LLRK
Sbjct: 88  YNPRVTIYGLGLLADFYLLRK 108


>05_04_0439 + 21260445-21260790,21264038-21264786
          Length = 364

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 224 LLLHGRNGQGGGAYP 180
           +LLHG  G GGG YP
Sbjct: 261 MLLHGGGGGGGGRYP 275


>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 215 HGRNGQGGGAYPCGLTRYPY 156
           HG +G GGGA P G     Y
Sbjct: 467 HGHHGHGGGAAPAGYPAMGY 486


>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
          Length = 515

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 215 HGRNGQGGGAYPCGLTRYPY 156
           HG +G GGGA P G     Y
Sbjct: 458 HGHHGHGGGAAPAGYPAMGY 477


>05_01_0151 -
           1001851-1001898,1002227-1002311,1003064-1003225,
           1003537-1003672,1004546-1004727,1005599-1005706,
           1006133-1006200,1006284-1006292
          Length = 265

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 62  TSSW*I*CLVASVTSSYHKVIQCRKSKYFTGSKDILLIRTGRHHRPAHFCREAVMRFG 235
           TS + I C  A+V   Y +V+QCR  +  T     L++      R A++ ++   R G
Sbjct: 57  TSKYKIGCS-AAVLVWYEQVVQCRAHEQQTAEAAWLVVTAPETERAANYNQQFSTRMG 113


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 270 SNIVTTAVPPFKPKRITA 217
           S++ + A PPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 233 RNALLLHGRNGQGGGAYPCGLTRYPYYQ*SIL 138
           +N ++L+  N Q GG++PC +   P  Q  +L
Sbjct: 707 KNLVVLNVANNQIGGSFPCWMHLLPKLQVLVL 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,730,013
Number of Sequences: 37544
Number of extensions: 167136
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)