Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j19
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016426-1|AAB65347.2|  254|Caenorhabditis elegans Hypothetical ...    26   7.5  
U28928-4|AAA68337.2|  489|Caenorhabditis elegans Hypothetical pr...    25   10.0 
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    25   10.0 
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      25   10.0 

>AF016426-1|AAB65347.2|  254|Caenorhabditis elegans Hypothetical
           protein W07B8.3 protein.
          Length = 254

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -1

Query: 215 HGRNGQGGGAYPCGLTRYPY---YQ*SILIYGI 126
           +  +G  GG YP G   YPY   Y  SIL YG+
Sbjct: 173 YSHSGSYGGLYPGGYKGYPYGGGYSNSIL-YGM 204


>U28928-4|AAA68337.2|  489|Caenorhabditis elegans Hypothetical
           protein C44B7.6a protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 260 LQRLSHPSNRNAL--LLHGRNGQGGGAYPCGLTRYPYYQ*SILIYGIGLLCDSCLLR 96
           ++R    S++ AL  L+ G  G G  + P    +  Y    ++I  +G LC  C+++
Sbjct: 70  IERKEKISSKFALINLMKGMLGAGCFSVPLAFKQSGYVSGLVIIVVLGFLCALCMIK 126


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 271  LKYSYNGCPTLQTETHYCFTAEM 203
            L+Y  +GC  L  ET  C  AEM
Sbjct: 2116 LQYICDGCIALNVETLMCLLAEM 2138


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 271  LKYSYNGCPTLQTETHYCFTAEM 203
            L+Y  +GC  L  ET  C  AEM
Sbjct: 2144 LQYICDGCIALNVETLMCLLAEM 2166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,495,751
Number of Sequences: 27780
Number of extensions: 141602
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)