Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j16
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   3.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   7.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   7.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 189 HRLRVEDAINISACNPRDNAEAD 257
           H++RV     I  CN R N + D
Sbjct: 461 HKIRVPPGTPIYECNKRCNCDID 483


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 340 EEKQSFVDFALPVTTSCQR 284
           +EK++ +DF + VT  C +
Sbjct: 517 KEKENEIDFKIEVTEDCNK 535


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 388 YWNNKIIVCQKFPFNHEE 335
           YWN    +C K+    EE
Sbjct: 46  YWNVPTFMCHKYGLRFEE 63


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 296 CSNRQSKIHKRLFFFMIKRK 355
           CS +Q KI  ++  F+I  K
Sbjct: 78  CSEKQKKIADKVVQFLIDNK 97


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 135 FLQQLTSIVLNNSH 176
           FLQ+L+S V +N+H
Sbjct: 932 FLQELSSWVSDNAH 945


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 296 CSNRQSKIHKRLFFFMIKRK 355
           CS +Q KI  ++  F+I  K
Sbjct: 78  CSEKQKKIADKVVQFLIDNK 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,156
Number of Sequences: 438
Number of extensions: 2053
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)