Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j13
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0499 + 10989645-10989929,10990303-10990395,10990952-109910...   190   1e-48
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    29   5.8  
07_03_1119 - 24118565-24118625,24119868-24119914,24120101-241201...    29   5.8  
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583...    29   5.8  

>02_02_0499 +
           10989645-10989929,10990303-10990395,10990952-10991066,
           10991187-10991297,10991701-10991783,10991872-10991929,
           10992490-10992569
          Length = 274

 Score =  190 bits (463), Expect = 1e-48
 Identities = 104/208 (50%), Positives = 132/208 (63%), Gaps = 4/208 (1%)
 Frame = -2

Query: 616 KQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMD 437
           K+    I +LE A LE  K G + ++LN DDH + LRK +R+P   RPDI HQ+LL + D
Sbjct: 74  KRRPGAIFVLERACLEVGKVGKTMQILNSDDHANYLRKQNRNPADYRPDIIHQALLAIFD 133

Query: 436 SPLNRAGLLQ-VYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLL 260
           SPL +AG LQ VY+ TEK VL EI P  R+P           QLL K +I A     KLL
Sbjct: 134 SPLTKAGRLQAVYVRTEKGVLFEIKPYVRMP----------PQLLQKLSITAVGKREKLL 183

Query: 259 KVIKNPVTSHLPVGVKKITMSFSSKIVQNCRDLVPK---DEPIVMVIGAMAHGKVEVDYS 89
            VIKNPVT +LPVG KKI +S+S++   N  D V K   D P+V V+GAMAHGK++ +YS
Sbjct: 184 NVIKNPVTRYLPVGAKKIGLSYSAEKSVNLFDYVAKSSDDVPLVFVVGAMAHGKIDNEYS 243

Query: 88  EDVISISNYPLSAALTCAKLCSAFEEVW 5
           +D I I NYPLSAA    ++CSA E+ W
Sbjct: 244 DDYIQICNYPLSAACCLNRICSALEQKW 271


>11_04_0305 -
           16162063-16162096,16162282-16164365,16165283-16165351,
           16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 505 FLKC-DHGHHSLIAQSYFHFSRFPVVRFPG 591
           FL C DHGHHSL A++   F R  V+ F G
Sbjct: 907 FLLCHDHGHHSLTAKA---FPRLQVLFFVG 933


>07_03_1119 -
           24118565-24118625,24119868-24119914,24120101-24120160,
           24120715-24120822,24121628-24121831
          Length = 159

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 721 CKVHSKMGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQ 575
           C  H    +  + VSK  D E D +  ++  SH+      L++I  N Q
Sbjct: 104 CCKHQLAARLAEAVSKHQDIELDELSSNIRRSHVADSFTLLLLIRHNNQ 152


>03_02_1035 -
           13557425-13557721,13557855-13558058,13558143-13558332,
           13558450-13558841,13558931-13559023,13559297-13559500,
           13559572-13559635,13559760-13559806,13559825-13559971,
           13560243-13560335,13560420-13560599,13560993-13561128,
           13561216-13561466,13561556-13561669,13561794-13561991,
           13562050-13562110,13562921-13563210
          Length = 986

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/55 (21%), Positives = 29/55 (52%)
 Frame = -2

Query: 169 RDLVPKDEPIVMVIGAMAHGKVEVDYSEDVISISNYPLSAALTCAKLCSAFEEVW 5
           +DL+  + P+V+     A  +++   +  +  I+++ LS  LT    C+ + +V+
Sbjct: 256 KDLISDNNPMVVANAVAALAEIQDSSTRPIFEITSHTLSKLLTALNECTEWGQVF 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,013,247
Number of Sequences: 37544
Number of extensions: 406308
Number of successful extensions: 942
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)