Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j13
         (812 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72514-1|AAC51641.1|  239|Homo sapiens C2f protein.                   319   7e-87
BC055314-1|AAH55314.1|  244|Homo sapiens EMG1 nucleolar protein ...   319   7e-87
U47924-20|AAB51325.1|  151|Homo sapiens C2f protein.                  242   9e-64

>U72514-1|AAC51641.1|  239|Homo sapiens C2f protein.
          Length = 239

 Score =  319 bits (784), Expect = 7e-87
 Identities = 148/202 (73%), Positives = 170/202 (84%)
 Frame = -2

Query: 607 KRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMDSPL 428
           +RLIV+LE A LE+VK G ++ELLNCD H  IL KN RDPG  RPDITHQSLLMLMDSPL
Sbjct: 36  RRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPL 95

Query: 427 NRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIK 248
           NRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP KLLKVIK
Sbjct: 96  NRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIK 155

Query: 247 NPVTSHLPVGVKKITMSFSSKIVQNCRDLVPKDEPIVMVIGAMAHGKVEVDYSEDVISIS 68
           NPV+ H PVG  K+  SFS  +V + R+LVP  +PIV V+GA AHGKV V+Y+E ++SIS
Sbjct: 156 NPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSIS 215

Query: 67  NYPLSAALTCAKLCSAFEEVWG 2
           NYPLSAALTCAKL +AFEEVWG
Sbjct: 216 NYPLSAALTCAKLTTAFEEVWG 237


>BC055314-1|AAH55314.1|  244|Homo sapiens EMG1 nucleolar protein
           homolog (S. cerevisiae) protein.
          Length = 244

 Score =  319 bits (784), Expect = 7e-87
 Identities = 148/202 (73%), Positives = 170/202 (84%)
 Frame = -2

Query: 607 KRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMDSPL 428
           +RLIV+LE A LE+VK G ++ELLNCD H  IL KN RDPG  RPDITHQSLLMLMDSPL
Sbjct: 41  RRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPL 100

Query: 427 NRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIK 248
           NRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP KLLKVIK
Sbjct: 101 NRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIK 160

Query: 247 NPVTSHLPVGVKKITMSFSSKIVQNCRDLVPKDEPIVMVIGAMAHGKVEVDYSEDVISIS 68
           NPV+ H PVG  K+  SFS  +V + R+LVP  +PIV V+GA AHGKV V+Y+E ++SIS
Sbjct: 161 NPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSIS 220

Query: 67  NYPLSAALTCAKLCSAFEEVWG 2
           NYPLSAALTCAKL +AFEEVWG
Sbjct: 221 NYPLSAALTCAKLTTAFEEVWG 242


>U47924-20|AAB51325.1|  151|Homo sapiens C2f protein.
          Length = 151

 Score =  242 bits (593), Expect = 9e-64
 Identities = 111/149 (74%), Positives = 128/149 (85%)
 Frame = -2

Query: 448 MLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPM 269
           MLMDSPLNRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP 
Sbjct: 1   MLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQ 60

Query: 268 KLLKVIKNPVTSHLPVGVKKITMSFSSKIVQNCRDLVPKDEPIVMVIGAMAHGKVEVDYS 89
           KLLKVIKNPV+ H PVG  K+  SFS  +V + R+LVP  +PIV V+GA AHGKV V+Y+
Sbjct: 61  KLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYT 120

Query: 88  EDVISISNYPLSAALTCAKLCSAFEEVWG 2
           E ++SISNYPLSAALTCAKL +AFEEVWG
Sbjct: 121 EKMVSISNYPLSAALTCAKLTTAFEEVWG 149


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,029,680
Number of Sequences: 237096
Number of extensions: 2268102
Number of successful extensions: 4674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4674
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)