Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14j13
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031633-11|CAA21025.1| 231|Caenorhabditis elegans Hypothetical... 244 6e-65
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 30 1.7
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 30 1.7
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical ... 29 5.2
AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical ... 29 5.2
U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z81531-2|CAB04316.1| 422|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF273800-1|AAG15149.1| 272|Caenorhabditis elegans nuclear recep... 28 9.1
>AL031633-11|CAA21025.1| 231|Caenorhabditis elegans Hypothetical
protein Y39A1A.14 protein.
Length = 231
Score = 244 bits (597), Expect = 6e-65
Identities = 118/229 (51%), Positives = 159/229 (69%), Gaps = 2/229 (0%)
Frame = -2
Query: 682 VSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRK 503
+S + D P K + T + + +K L V+LE LE+ K G + +L+ D H + LRK
Sbjct: 1 MSHEYDTVAPPNAKRMKTDNQLEDKKILYVVLEGCSLETAKVGGEYAILSSDKHANFLRK 60
Query: 502 NDRDPGSCRPDITHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAG 323
+DP RPDI HQ LL L+DSPLNRAG L+V+ T KNVL++++PQ RIPRTF RF G
Sbjct: 61 QKKDPADYRPDILHQCLLNLLDSPLNRAGKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCG 120
Query: 322 LMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSFSSKIVQNCRDLV-PK-D 149
LMVQLLHK +IRA++ KL+ V+KNPV++HLPVG +K+ MSF+ + LV P+ D
Sbjct: 121 LMVQLLHKLSIRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFNVPELTMANKLVAPETD 180
Query: 148 EPIVMVIGAMAHGKVEVDYSEDVISISNYPLSAALTCAKLCSAFEEVWG 2
EP+V++IG +A GK+ VDY++ ISNYPLSAALTCAK+ S EE+WG
Sbjct: 181 EPLVLIIGGIARGKIVVDYNDSETKISNYPLSAALTCAKVTSGLEEIWG 229
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -2
Query: 637 LVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDI-TH 461
+VTS + ++ + I E +L S K+ FE+++ H+ KND D D+ +
Sbjct: 131 VVTSEMAGNDRFVTAIREELELFSNKSTKLFEMIH---FSHMNTKNDTDVDLKLADVKKN 187
Query: 460 QSLLMLMDSPLNRAGLLQVYIHTEKNVLI 374
Q+ ++L+ + +AG ++ H EK +I
Sbjct: 188 QAKIILLYANAAQAG--TIFSHAEKMDMI 214
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -2
Query: 637 LVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDI-TH 461
+VTS + ++ + I E +L S K+ FE+++ H+ KND D D+ +
Sbjct: 131 VVTSEMAGNDRFVTAIREELELFSNKSTKLFEMIH---FSHMNTKNDTDVDLKLADVKKN 187
Query: 460 QSLLMLMDSPLNRAGLLQVYIHTEKNVLI 374
Q+ ++L+ + +AG ++ H EK +I
Sbjct: 188 QAKIILLYANAAQAG--TIFSHAEKMDMI 214
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = -2
Query: 391 EKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVK 212
EK+ +I I+ +T I + K Q +H FAI ASD + + N L + V+
Sbjct: 779 EKSSVISIDAKTGIVKLLKSL-DREDQDVHTFAIIASDEGFPMRVSVTN-----LTISVE 832
Query: 211 KITMSFSSKIVQNCRDLVPKDEPIVMVIGAMA 116
+ + +VQ+ R +P+D P + MA
Sbjct: 833 DVNDNPPKCVVQHSRARIPEDLPHGAFVSCMA 864
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = -2
Query: 391 EKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVK 212
EK+ +I I+ +T I + K Q +H FAI ASD + + N L + V+
Sbjct: 779 EKSSVISIDAKTGIVKLLKSL-DREDQDVHTFAIIASDEGFPMRVSVTN-----LTISVE 832
Query: 211 KITMSFSSKIVQNCRDLVPKDEPIVMVIGAMA 116
+ + +VQ+ R +P+D P + MA
Sbjct: 833 DVNDNPPKCVVQHSRARIPEDLPHGAFVSCMA 864
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = -2
Query: 391 EKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVK 212
EK+ +I I+ +T I + K Q +H FAI ASD + + N L + V+
Sbjct: 779 EKSSVISIDAKTGIVKLLKSL-DREDQDVHTFAIIASDEGFPMRVSVTN-----LTISVE 832
Query: 211 KITMSFSSKIVQNCRDLVPKDEPIVMVIGAMA 116
+ + +VQ+ R +P+D P + MA
Sbjct: 833 DVNDNPPKCVVQHSRARIPEDLPHGAFVSCMA 864
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical
protein ZC373.4 protein.
Length = 1211
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 697 KKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNS 548
KK+KLV D D P P+ + E L + LE V+NGNS
Sbjct: 452 KKKKLVETDGDAGLRPPPELMTKRASTGGESLLAAVKVLKNLEVVENGNS 501
>AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical
protein C34H4.2 protein.
Length = 449
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 574 LESVKNGNSFELLNCDDHGHILRKNDRDPGSCR 476
L+S KNG +++ N +D ++ +D DP + R
Sbjct: 26 LKSYKNGTVYQVANLEDSANLYVASDDDPSNLR 58
>AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical
protein H42K12.3 protein.
Length = 522
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -2
Query: 181 VQNCRDLVPKDEPIVMVIGAMAHGKVEVDYSEDVISISNYPLSAALTCAKLCSAFEEVWG 2
VQNC +++P P M V VD ++ I++ N + +A + L E+VWG
Sbjct: 419 VQNCPEIIPTSTP---QNNEMIRSVVSVDGDDEPIAVDNISVDSA-PSSILPVLNEQVWG 474
>U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical
protein T16A1.2 protein.
Length = 786
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 496 RDPGSCRPDITHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEINP-QTRIPRTFKRFAGL 320
+D S P++ + SLL L+ G + I+ + +L +I+ FK+ +GL
Sbjct: 371 KDVNSDIPNLKYNSLL---PQKLHLIGYIVQVINNKNGILDKIDDISDNNSSDFKKISGL 427
Query: 319 MVQLLHKFAIRASDGPMK 266
++ L H F I S G MK
Sbjct: 428 IMSLRHHFEILKS-GDMK 444
>Z81531-2|CAB04316.1| 422|Caenorhabditis elegans Hypothetical
protein F36D3.2 protein.
Length = 422
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 780 ETKYFPDDGRSILL*ISHNIARCILKWVKKENW----FLKMMILNLIRF 646
ET +FPDD + L + C+ K K++W F K+ L+L F
Sbjct: 156 ETHFFPDDDVIVELNPLEKMTFCLRKLRSKQSWNPNFFTKINFLDLFEF 204
>AF273800-1|AAG15149.1| 272|Caenorhabditis elegans nuclear receptor
NHR-54 protein.
Length = 272
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 780 ETKYFPDDGRSILL*ISHNIARCILKWVKKENW----FLKMMILNLIRF 646
ET +FPDD + L + C+ K K++W F K+ L+L F
Sbjct: 6 ETHFFPDDDVIVELNPLEKMTFCLRKLRSKQSWNPNFFTKINFLDLFEF 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,459
Number of Sequences: 27780
Number of extensions: 400715
Number of successful extensions: 1095
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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