Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j11
         (806 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC095436-1|AAH95436.1|  108|Homo sapiens MGC71993 protein protein.     39   0.024
BC062705-1|AAH62705.1|   98|Homo sapiens similar to DNA segment,...    39   0.024
BC051802-1|AAH51802.1|   98|Homo sapiens similar to DNA segment,...    39   0.024
AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens ...    34   0.69 
U72788-1|AAD08631.1|  295|Homo sapiens SP2 metalloprotease protein.    31   3.7  
AF019612-1|AAC51937.1|  519|Homo sapiens S2P protein.                  31   3.7  

>BC095436-1|AAH95436.1|  108|Homo sapiens MGC71993 protein protein.
          Length = 108

 Score = 38.7 bits (86), Expect = 0.024
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -2

Query: 742 GVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVSGH 563
           G+F+ + +  L+ED+PF EK+     E+    +   Y   + NC+IAA LYL+    S  
Sbjct: 40  GIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYEQVSYNCFIAAGLYLLLGGFSFC 95

Query: 562 QFWLNNR 542
           Q  LN R
Sbjct: 96  QVRLNKR 102


>BC062705-1|AAH62705.1|   98|Homo sapiens similar to DNA segment,
           Chr 11, Brigham & Womens Genetics 0434 expressed
           protein.
          Length = 98

 Score = 38.7 bits (86), Expect = 0.024
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -2

Query: 742 GVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVSGH 563
           G+F+ + +  L+ED+PF EK+     E+    +   Y   + NC+IAA LYL+    S  
Sbjct: 30  GIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYEQVSYNCFIAAGLYLLLGGFSFC 85

Query: 562 QFWLNNR 542
           Q  LN R
Sbjct: 86  QVRLNKR 92


>BC051802-1|AAH51802.1|   98|Homo sapiens similar to DNA segment,
           Chr 11, Brigham & Womens Genetics 0434 expressed
           protein.
          Length = 98

 Score = 38.7 bits (86), Expect = 0.024
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -2

Query: 742 GVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVSGH 563
           G+F+ + +  L+ED+PF EK+     E+    +   Y   + NC+IAA LYL+    S  
Sbjct: 30  GIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYEQVSYNCFIAAGLYLLLGGFSFC 85

Query: 562 QFWLNNR 542
           Q  LN R
Sbjct: 86  QVRLNKR 92


>AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46490 fis, clone THYMU3027540. ).
          Length = 129

 Score = 33.9 bits (74), Expect = 0.69
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 38  MYSIIWCGSNTYTYFNNSCIFTQN*IAYNIFYCYYSNHL 154
           MY  + C S+TY Y  + C++  +   Y    C Y  H+
Sbjct: 1   MYMYVLCISHTYVYITHICMYITHICVYQTHVCVYHTHM 39


>U72788-1|AAD08631.1|  295|Homo sapiens SP2 metalloprotease protein.
          Length = 295

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = -3

Query: 357 KTSSSSACISPLLD-----VNLSHSPPQ*TILYLSHPI 259
           K+SSSS CI P L+     + + H PPQ  +LY+ HP+
Sbjct: 155 KSSSSSFCIIPSLETHTRLIKVKH-PPQIDMLYVGHPL 191


>AF019612-1|AAC51937.1|  519|Homo sapiens S2P protein.
          Length = 519

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = -3

Query: 357 KTSSSSACISPLLD-----VNLSHSPPQ*TILYLSHPI 259
           K+SSSS CI P L+     + + H PPQ  +LY+ HP+
Sbjct: 379 KSSSSSFCIIPSLETHTRLIKVKH-PPQIDMLYVGHPL 415


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,844,470
Number of Sequences: 237096
Number of extensions: 2197994
Number of successful extensions: 7278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7275
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)