Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j10
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    27   0.54 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   0.54 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    24   3.8  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    23   5.1  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    23   6.7  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   8.8  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 130 TAVKKYYLAVIYFTTFATFHPLNLI 56
           T  ++Y+LAV  F  F  F PL+L+
Sbjct: 385 TTHREYHLAVFIFIQFLVFVPLSLV 409


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 45  CFPFIKLSGWNVANVVK*ITAK*YFLTAVTLSNSSQNV 158
           CF  + LSGWN       I     +LT +T+   + N+
Sbjct: 202 CFRSLALSGWNPVPAEFVIQGHLLYLTVLTIEGKTYNI 239


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +2

Query: 62  IKRMECGKCCEINHSQIIFLDCCHTL*QFTERKIPEAASSTTMVADGGSTNMSDEC 229
           I+ ++C  C ++    +I + C H L    E       SS  M     + N+S +C
Sbjct: 741 IETLQCSLCMDVVAELLIIVPCGHFL--CRECLTHVITSSEDMAKQTSNENISPKC 794


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 76  FHPLNLINGKQNFINN 29
           FHP  LI GK++  NN
Sbjct: 87  FHPEQLITGKEDASNN 102


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 128 SSQEILFGCDLFHN 87
           SSQEIL  CD+F +
Sbjct: 610 SSQEILKACDIFRD 623


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 77  CGKCCEINHSQIIFLDCCHTL*Q 145
           CG+    +  ++IFL C H L Q
Sbjct: 274 CGEYMFNSRERVIFLSCSHPLHQ 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,048,024
Number of Sequences: 5004
Number of extensions: 16999
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)