Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14j10
(261 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0184 - 15570471-15570684,15571085-15571354,15571489-155717... 31 0.17
05_01_0244 - 1825141-1825155,1825329-1825416,1825435-1825742,182... 26 3.6
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 26 3.6
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 25 6.3
03_01_0312 + 2469096-2470862 25 6.3
12_01_0703 + 6058765-6059091,6059153-6059464,6059560-6059574 25 8.4
11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876 25 8.4
10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179 25 8.4
09_04_0294 - 16444565-16445137,16445999-16446256,16446609-164471... 25 8.4
08_02_0829 - 21604845-21605588 25 8.4
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 25 8.4
01_06_1065 - 34238812-34239307,34239583-34240154,34241687-342419... 25 8.4
>10_08_0184 -
15570471-15570684,15571085-15571354,15571489-15571711,
15571809-15571875,15571996-15572137,15572226-15572290
Length = 326
Score = 30.7 bits (66), Expect = 0.17
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 65 KRMECGKCCEINHSQIIFLDCCHTL 139
+ +ECG C E+N ++I+ DC H+L
Sbjct: 135 RELECGICLEVN-AKIVLPDCAHSL 158
>05_01_0244 -
1825141-1825155,1825329-1825416,1825435-1825742,
1827084-1827128,1827198-1827614,1828345-1828818
Length = 448
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 245 RFGYADTHHSYLSIRRQQPSLLTMLLPEFYVL*TVRECDSSQ-EILFGCDLFH 90
R Y TH + + + P L MLLP F+ T + S+ E+ D FH
Sbjct: 282 RLRYDWTHDQWQQVTQMIPGLFYMLLPTFHNNVTKKFAKGSKVEVTSNDDGFH 334
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 76 FHPLNLINGKQNFINN 29
FHP LINGK++ NN
Sbjct: 87 FHPEQLINGKEDAANN 102
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 261 IAALLTFWLRRHSSLIFVDPPSATIVVDDAAS 166
IAA F L SS FVDPPS V ++S
Sbjct: 53 IAAAAAFPLSPSSSSSFVDPPSYADVAASSSS 84
>03_01_0312 + 2469096-2470862
Length = 588
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 143 VRECDSSQEI-LFGCDLFHNICHIPSA*FNKWKTKFY 36
+ +C +S L CDL + CH PSA N ++ +
Sbjct: 363 IDQCRTSSVCKLLECDLGESKCHSPSAIMNMFQNSLF 399
>12_01_0703 + 6058765-6059091,6059153-6059464,6059560-6059574
Length = 217
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 240 WLRRHSSLIFVDPPSATIVVDD 175
WL H+S + DP ++ IV DD
Sbjct: 184 WLESHASGLGRDPHTSAIVADD 205
>11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876
Length = 528
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 240 WLRRHSSLIFVDPPSATIVVDD 175
WL H+S + DP ++ IV DD
Sbjct: 308 WLESHASGLGRDPHTSAIVADD 329
>10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179
Length = 404
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 240 WLRRHSSLIFVDPPSATIVVDD 175
WL H+S + DP ++ IV DD
Sbjct: 184 WLESHASGLGRDPHTSAIVADD 205
>09_04_0294 -
16444565-16445137,16445999-16446256,16446609-16447106,
16449641-16449676,16451057-16451269,16451971-16452060,
16453627-16453851
Length = 630
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 240 WLRRHSSLIFVDPPSATIVVDD 175
WL H+S + DP ++ IV DD
Sbjct: 411 WLESHASGLGRDPHTSAIVADD 432
>08_02_0829 - 21604845-21605588
Length = 247
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 170 AASSTTMVADGGSTNMSDECLR 235
AASS+T A GG+ +D C R
Sbjct: 107 AASSSTSKASGGNPGRADSCER 128
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 7/27 (25%)
Frame = +2
Query: 80 GKCCEINHSQIIF-------LDCCHTL 139
GKCC +HS IF L+CC++L
Sbjct: 1044 GKCCCFDHSLAIFNEIPSIALECCNSL 1070
>01_06_1065 -
34238812-34239307,34239583-34240154,34241687-34241998,
34242060-34242386
Length = 568
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 240 WLRRHSSLIFVDPPSATIVVDD 175
WL H+S + DP ++ IV DD
Sbjct: 184 WLESHASGLGRDPHTSAIVADD 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,627,701
Number of Sequences: 37544
Number of extensions: 102489
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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