Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j08
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    29   2.4  
07_03_1230 + 25044126-25044683                                         27   5.6  
01_03_0092 - 12386381-12386401,12386580-12386968,12388346-123885...    27   5.6  
05_05_0304 - 23965842-23965849,23965940-23966107,23966303-239665...    27   7.4  
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319...    27   9.8  

>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 316 KMGAKWCNMAKACNHDRVPICGISHAGDV 230
           +MG  W    K C+ D  P C +   GDV
Sbjct: 541 EMGDSWSYRCKECDFDLHPKCALEEKGDV 569


>07_03_1230 + 25044126-25044683
          Length = 185

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 349 ERDNEDIAMGRKMGAKWCNMAKACNH 272
           ER   ++ + R  G++WCN+    +H
Sbjct: 69  ERHEHELTLTRLTGSRWCNVCDVISH 94


>01_03_0092 -
           12386381-12386401,12386580-12386968,12388346-12388541,
           12388872-12388941,12389599-12389822
          Length = 299

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 4   YHTLKQXGLLVNKRYTLRENVQEKQGRNLISHRNSCLLDDGRQLASIYPRDMLFVC 171
           +HT K+  L + +     E VQE     L+ +R+SC     R    ++P +  FVC
Sbjct: 181 HHTTKRE-LSITEEPGRTETVQEAP---LVQYRSSCAFCSDRHYEVLHPSEEEFVC 232


>05_05_0304 -
           23965842-23965849,23965940-23966107,23966303-23966575,
           23966676-23967039,23967762-23968133
          Length = 394

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 352 QERDNEDIAMGRKMGAKWCNMA 287
           +E +N+ I + RKMG KW  MA
Sbjct: 101 KEEENKIINLHRKMGNKWSRMA 122


>01_05_0679 +
           24230740-24230929,24231330-24231461,24231710-24231977,
           24232170-24232388,24233538-24233673,24233899-24234147,
           24234783-24235100
          Length = 503

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 204 MSHRSLKPTTSPA*LIPQIGTRSWLHAFAMLHHLAPIFRPIAMSSLSLSCGGPCELT 374
           M+   L PT +PA        R W+H      H   I  P+ +SSL  +   PC+ T
Sbjct: 1   MASLLLLPTAAPAWPTASCWQRMWVHPGPSFPHRMMIRHPL-LSSLHAARLMPCKCT 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,774
Number of Sequences: 37544
Number of extensions: 236723
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)