Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j08
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   2.8  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   2.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 229 VGFRDLCDMFDYNCI 185
           +G RDLCD+  YN +
Sbjct: 304 IGSRDLCDVQRYNLL 318



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 237  EMSSASEIYATCSIITALDVEITDKQ 160
            + + A ++Y T   I     E+TDKQ
Sbjct: 1074 DCTMAEDVYQTLKHIIQTHGEMTDKQ 1099


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 187 CSYNRTCRIDL*SRRHLQ 240
           C Y   C ID+  RR  Q
Sbjct: 223 CKYGNNCEIDMYMRRKCQ 240



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 229 VGFRDLCDMFDYNCIRRRNYRQTACPEDK 143
           VG R  C + +Y C  +R   +    +DK
Sbjct: 250 VGMRPECVVPEYQCAVKRKEEKAQKEKDK 278


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 187 CSYNRTCRIDL*SRRHLQ 240
           C Y   C ID+  RR  Q
Sbjct: 20  CKYGNNCEIDMYMRRKCQ 37


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 275 PRPRPDLRYQSRWRCR 228
           P P PD+ Y+ R R R
Sbjct: 197 PEPYPDITYEIRLRRR 212


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 51  IKRKCSRKTGQ 83
           IK KC R+TG+
Sbjct: 375 IKEKCDRRTGK 385


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 51  IKRKCSRKTGQ 83
           IK KC R+TG+
Sbjct: 86  IKEKCDRRTGK 96


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 303 LAPIFRPIAMSSLSLSC 353
           +APIF+ I  ++  LSC
Sbjct: 93  IAPIFKGIGYATCVLSC 109


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 303 LAPIFRPIAMSSLSLSC 353
           +APIF+ I  ++  LSC
Sbjct: 146 IAPIFKGIGYATCVLSC 162


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 223 FRDLCDMFDYNCIRRRNYRQTACPEDK 143
           F+D  D FDY+ + +   +   C ++K
Sbjct: 493 FKDKSDWFDYSEVSKWVQKGQICLKEK 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,867
Number of Sequences: 438
Number of extensions: 2451
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)