Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14j07
(219 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 1.8
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 24 2.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 23 4.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 4.1
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 23 4.1
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 23 4.1
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 23 5.5
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 23 5.5
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 7.2
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 7.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 23 7.2
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 22 9.6
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 22 9.6
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 22 9.6
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 22 9.6
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 22 9.6
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 31 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 150
CK Q+S +V+ G+GA+M D+ ++ + + N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 100 PASPLLCQSSVPPTQRCYP--VNPCINIYQLLHS 5
P S LL S+ YP V C+N+YQ+L S
Sbjct: 155 PPSILLVDYSLVSQGYTYPKQVRECLNVYQVLIS 188
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 31 CKDLQDSTVVLVARCSGKGAEMQV 102
C+ +QD+ V++V +G G Q+
Sbjct: 106 CQQIQDNRVIVVVGETGSGKSTQI 129
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVP 65
PPV +PP P P+ P S+P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 147 IVHQS-VHLRIVVRSVDLHLRSFARAACHQH 58
I+H S VH+ + S D+ + ++ +A H H
Sbjct: 63 IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLH 93
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 88 LLCQSSVPPTQR 53
LLCQ+S+ PTQR
Sbjct: 108 LLCQASLNPTQR 119
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 94 SPLLCQSSVPPTQRCYPVNPCINIYQLLHSN 2
S LL S P+Q YP+ CI + + SN
Sbjct: 605 SVLLNVFSSTPSQYRYPILKCIQTWIFISSN 635
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIY 20
PP + P +C + L C +S P T R + +N I ++
Sbjct: 71 PPTLTGPTSNRVCNALALLQCIASHPET-RIHFLNAHITLF 110
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 112 DDNPEVNRLVDNNPFFTFLI 171
D N +NR+VD P ++L+
Sbjct: 398 DQNQLINRIVDKLPDLSYLV 417
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 35 RIYRIAPLCWWHAALAK 85
R Y PLC WH + A+
Sbjct: 102 RTYLEVPLCRWHISQAR 118
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 95 ISAPLPEQRATNTTVLSCKSLHQHIP 18
I+AP AT +L+ ++ QH+P
Sbjct: 398 ITAPTSPYAATQEELLAFTTIRQHLP 423
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 205 YS*SFLNLQVYKLKK*KMGYCPPV 134
Y S LQ+ KL + +MG P V
Sbjct: 115 YQYSLTTLQIQKLSRKEMGLAPSV 138
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -3
Query: 52 CYPVNPCINIYQL 14
CY +N C+ +Y L
Sbjct: 1310 CYTINICVKVYGL 1322
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 77 EQRATNTTVLSCKSLHQHIPAVTLK 3
EQ+A + + S +H+H+ VTL+
Sbjct: 283 EQQALSHMIYSHPIVHKHVGLVTLR 307
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 166 LIYRLVNLKNFTNI 207
L+Y L++ KN TNI
Sbjct: 421 LLYHLIHSKNLTNI 434
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 92 SAPLPEQRATNTT 54
S+P+PE TNTT
Sbjct: 290 SSPVPESTTTNTT 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,585
Number of Sequences: 5004
Number of extensions: 14909
Number of successful extensions: 51
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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