Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14j07
(219 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.008
12_02_0046 + 12830974-12832386 27 1.6
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 27 1.6
04_03_1017 + 21747044-21748051 27 1.6
02_04_0413 + 22681957-22682035,22682253-22682788 27 1.6
11_06_0610 - 25449085-25453284 27 2.1
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 27 2.1
03_01_0515 - 3864796-3865425 27 2.1
08_01_0084 - 613255-613989 27 2.7
08_01_0082 - 588269-588434,590800-591653 27 2.7
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 27 2.7
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 2.7
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 2.7
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 26 4.7
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 26 4.7
09_03_0192 + 13344558-13344942,13345038-13345591 26 4.7
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 26 4.7
08_01_0083 - 604175-605776 26 4.7
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 26 4.7
04_04_0187 - 23411085-23411477,23411626-23411631 26 4.7
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 26 4.7
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 25 6.3
10_03_0006 + 6929237-6929304,6929581-6929603,6929609-6929710,692... 25 6.3
08_02_1035 - 23840606-23841109,23841194-23841199 25 6.3
07_03_1107 - 24024387-24024497,24025799-24026410 25 6.3
05_05_0320 + 24085600-24086458,24087025-24087171,24087265-240873... 25 6.3
04_03_0803 - 19835284-19836050,19836337-19836418 25 6.3
04_03_0801 - 19828175-19828770,19828913-19828994 25 6.3
04_01_0007 + 168423-168485,168590-168697,169662-169741,170497-17... 25 6.3
02_05_0805 - 31859201-31860151 25 6.3
12_01_0382 + 2995263-2995673 25 8.3
10_03_0035 - 7265037-7265455,7265684-7265812,7265909-7265951,726... 25 8.3
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 25 8.3
05_05_0288 - 23870228-23870965,23871515-23871584,23871662-238717... 25 8.3
02_01_0435 - 3164421-3165032 25 8.3
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 151 GYCPPVCSPPDCRPICGPASPLLCQSSVPP 62
G CPP C PP C C P PL C PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = -3
Query: 142 PPVCSPPDCRPICGP--ASPLLCQSSV---PPTQRCYPVNP 35
PPV SPP + I GP ASP QS V P C P P
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCVAASAPPPWCVPPPP 319
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 193 FLNLQVYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 44
F+N Q + K GY + P + R P SP+ + + P T++C+P
Sbjct: 807 FVNSQFFSALSRKEGYIHNL--PTEGRRNLVPRSPMTIEEAFPFTRQCWP 854
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQS---SVPPTQRCYP 44
PP + PD P P+SPL + +VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 157 KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRC-YPVNPC 32
K G C CS +C P P SP CQ PPT C +P PC
Sbjct: 143 KPGCCCCGCSGGECPP---PPSPP-CQHECPPTPPCEHP--PC 179
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 35
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 35
PP+ SPP P+ P P+ +S PP P P
Sbjct: 1163 PPIKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1196
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 35
PPV SPP P+ P P+ +S PP P P
Sbjct: 1179 PPVKSPPPPAPVILPPPPV--KSPPPPAPVISPPPP 1212
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 35
PPV SPP P+ P P+ +S PP P P
Sbjct: 1211 PPVKSPPPPAPVILPPPPV--KSPPPPAPVISPPPP 1244
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPP 62
PPV SPP P+ P P + S PP
Sbjct: 1227 PPVKSPPPPAPVISPPPP---EKSPPP 1250
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = -3
Query: 148 YCPPVCSPPDCR---PICGPASPLLCQSSVPPTQRCYPVNPCINIYQLLHSN 2
+ PPV +PP P GP P S+ P P P IN+ L S+
Sbjct: 215 FAPPVPAPPPMSAMPPPPGPIQPAPISSAAPAVPLELPPQPPINLQGLSFSS 266
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYQL 14
PP SPP P P SP+ +SS PP PV +N Y +
Sbjct: 94 PPAASPPPPPPSPPPPSPV--KSSPPPPPAWSPVTN-VNDYTI 133
>08_01_0084 - 613255-613989
Length = 244
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 46 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDN 147
D TV + RC+G+GAE VH + V+ +V +
Sbjct: 102 DGTVTVALRCTGEGAEF-VHAAAPGVAVSDVVSS 134
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 46 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDN 147
D TV + RC+G+GAE VH + V+ +V +
Sbjct: 104 DGTVTVALRCTGEGAEF-VHAAAPGVAVSDVVSS 136
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 130 SPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYQLL 11
S PDC CG SP C + V + +C PC +Y+ +
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRCM 125
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 82 CQSSVPPTQRCYPVNP 35
C SS+PPTQ Y NP
Sbjct: 453 CDSSLPPTQSLYKGNP 468
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 145 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 44
CPP P P G +P++ VPP C+P
Sbjct: 351 CPPSWPPQLMVPAPGICTPVVPIPLVPPLWSCFP 384
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +1
Query: 88 AEMQVHRSDDNPEV----NRLVDNNPFFTFLIYRLVNLKNFTNISIKC 219
+EM + R DN + N VD P F+FLIY V F + C
Sbjct: 352 SEMAMKRLLDNLNIKVLGNTTVDRLPIFSFLIYPPVEDSLFLRVEPGC 399
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 184 LQVYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPV 41
+ ++KL + PP PP RP+ G P + + VP TQ P+
Sbjct: 449 VHIHKLASHSQFHAPPHQPPPPERPVPG-IVPGIVRPPVPTTQITNPM 495
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 139 PVCSPPDCRPICGPASPLL 83
P+C P P+C SPLL
Sbjct: 162 PLCIEPPSSPVCNAPSPLL 180
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 25.8 bits (54), Expect = 4.7
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 83 LPEQRATNTTVLSCKSLHQHIPAVTLK 3
L +Q + +L C+ + QH+PA+ ++
Sbjct: 1481 LTDQESQKILLLCCEFIKQHVPAIVMQ 1507
>08_01_0083 - 604175-605776
Length = 533
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 46 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDN 147
D TV + RC+G+GAE VH + V+ +V +
Sbjct: 102 DLTVTVTLRCTGEGAEF-VHAAAPGVAVSDVVSS 134
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 124 PDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYQLL 11
P R +C P S S+ PP + P +P + LL
Sbjct: 10 PSSRSLCAPRSFSFSTSASPPPRAPVPASPSYLAHHLL 47
>04_04_0187 - 23411085-23411477,23411626-23411631
Length = 132
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 148 YCPPVCSPPDCRPICGPASPLLCQSSVPP 62
Y PP PP P C P P + PP
Sbjct: 90 YWPPYWCPPPEDPTCKPCYPRYSYAPPPP 118
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 91 EMQVHRSDDNPEVNRLVDNNPFFTFLIYRLVNLKNFTNI 207
E+ + D+N + L D + F + RL +KN T +
Sbjct: 560 ELLYSKEDNNEHIGHLADRSKPIIFSMARLDKIKNITGL 598
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 37 DLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 150
D+Q + L A+CS K E+++ +D+ +L N
Sbjct: 666 DMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKN 703
>10_03_0006 +
6929237-6929304,6929581-6929603,6929609-6929710,
6929752-6930207,6930237-6930538,6930628-6930717,
6931379-6931471
Length = 377
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 64 VARCSGKGAEMQVHRSDDNPEVNRLVDNNPF 156
+A+C+ +G + ++H S V +V NPF
Sbjct: 293 LAKCAAQGCKWRIHASVVADGVTIMVKTNPF 323
>08_02_1035 - 23840606-23841109,23841194-23841199
Length = 169
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 78 WQRSGDAGPQIGRQSGGEQTGG 143
W GD G G + GG TGG
Sbjct: 81 WAAGGDTGATAGGRVGGVATGG 102
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPPTQ 56
PP SPP P+ P SP + PT+
Sbjct: 107 PPASSPPVEAPVASPPSPAAEAPATIPTK 135
>05_05_0320 +
24085600-24086458,24087025-24087171,24087265-24087395,
24087536-24087746,24087834-24088071,24088757-24088931
Length = 586
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQS 74
PP SPP CRP P LLC S
Sbjct: 3 PPPPSPP-CRPRVKPERALLCFS 24
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 133 CSPPDCRPICGPASPLLCQSSVPPTQRC 50
C DC CG P+ C PP RC
Sbjct: 208 CDHADCGGWCGGQPPINCPPP-PPPSRC 234
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Frame = -3
Query: 139 PVCSPPDC--RPICGP 98
P CSPP C +P+C P
Sbjct: 190 PCCSPPPCPWQPVCPP 205
>04_01_0007 +
168423-168485,168590-168697,169662-169741,
170497-170548,171112-171200,171756-171875,
172204-172248,172352-172436
Length = 213
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 67 PPTQRCYPVNPCINIYQLLHS 5
PPT YP++ C IY + H+
Sbjct: 5 PPTTAMYPLHRCKTIYLVRHA 25
>02_05_0805 - 31859201-31860151
Length = 316
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 145 CPPVCSPPDCRPICGPASPLLCQSSVPPT 59
CP C+ P +P+ GP +P L VPP+
Sbjct: 196 CPGQCAWPFHQPVYGPQTPAL----VPPS 220
>12_01_0382 + 2995263-2995673
Length = 136
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 157 KMGYCPPVCSPPDCRPICGPASPLL 83
K G CP VCS P P G +P+L
Sbjct: 48 KCGTCPTVCSSPP-PPASGNYNPVL 71
>10_03_0035 -
7265037-7265455,7265684-7265812,7265909-7265951,
7266321-7266344
Length = 204
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = -3
Query: 142 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 32
PP PP P A +C + V P + C + C
Sbjct: 122 PPPPPPPQPAPAARAAFGTICGAGVAPGRACLCLGQC 158
>06_03_0541 -
21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 63 GGTLLWQRSGDAGPQIGRQSGGEQTGG 143
GGT +RSG G Q+ +G E+ GG
Sbjct: 178 GGTAQEKRSGGIGMQLEVGNGKEELGG 204
>05_05_0288 -
23870228-23870965,23871515-23871584,23871662-23871749,
23871825-23871882,23871963-23872039,23872111-23872258
Length = 392
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 76 SGKGAEMQVHRSDDNPEVNRLVDNNPF 156
SGK ++ H DDN + R D N F
Sbjct: 363 SGKNLDLNTHNIDDNDQGYRHFDLNGF 389
>02_01_0435 - 3164421-3165032
Length = 203
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 121 DCRPICGPASPLLCQ 77
DCR CG +S +LC+
Sbjct: 139 DCRSYCGSSSSVLCE 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,012,086
Number of Sequences: 37544
Number of extensions: 123105
Number of successful extensions: 482
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -