Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j07
         (219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   0.32 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   0.56 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   0.99 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   4.0  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   5.3  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    19   6.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    19   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    19   6.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   9.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   9.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   9.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 0.32
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 148 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQR--CYPVNPCI 29
           +CP V   P C  IC P    +C+      ++  C P + C+
Sbjct: 53  FCPNVVPKPLCIKICAPG--CVCRLGYLRNKKKVCVPRSKCL 92


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 0.56
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 148 YCPPVCSPPDCRPICGP 98
           +CP V   P C  IC P
Sbjct: 53  FCPNVVPKPLCIKICAP 69


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 0.99
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 148 YCPPVCSPPDCRPICGPASPLL 83
           +C P C P    P     SPLL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPLL 64


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
 Frame = -3

Query: 148 YCPPVCSPPDCRP-IC--GPASPLLC 80
           +C P C P    P  C   P+  LLC
Sbjct: 44  FCLPFCGPNVINPFFCDMSPSLSLLC 69


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 115 DNPEVNRLVDN 147
           D+ +VNRLV+N
Sbjct: 92  DSEQVNRLVNN 102


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 136 VCSPPDCRPICG 101
           V  P  CR ICG
Sbjct: 36  VIKPHICRKICG 47


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 49  YPVNPCI 29
           YP NPC+
Sbjct: 117 YPFNPCL 123


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 4/5 (80%), Positives = 4/5 (80%)
 Frame = +2

Query: 53  PLCWW 67
           P CWW
Sbjct: 487 PCCWW 491


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 4/5 (80%), Positives = 4/5 (80%)
 Frame = +2

Query: 53  PLCWW 67
           P CWW
Sbjct: 540 PCCWW 544


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 49  YPVNPCI 29
           YP NPC+
Sbjct: 133 YPFNPCL 139


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 150 PIFYFFNL 173
           P+FY FNL
Sbjct: 213 PMFYVFNL 220


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 127 VNRLVDNNPFFTFLIYRLVN 186
           +NR+V       F I+R  N
Sbjct: 485 INRVVQRGTKMQFCIFRTAN 504


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 72  LLWQRSGDAGPQIGRQS 122
           + W + G   P  GRQS
Sbjct: 365 ITWYKDGRQLPGTGRQS 381


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 72  LLWQRSGDAGPQIGRQS 122
           + W + G   P  GRQS
Sbjct: 365 ITWYKDGRQLPGTGRQS 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,617
Number of Sequences: 438
Number of extensions: 1253
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)