Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j06
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    29   0.47 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.8  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   7.6  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   7.6  

>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -2

Query: 466 GFHQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINN 290
           GF+ P    +V +A    +S++  KH    E+ L  + S +KV Q+ KP    ND  N+
Sbjct: 205 GFNAPSPDDIVLMAQ--SKSKSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNND 261


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 319 CDLENDKINNPFNPKHDLKIYNAACSRIENTAIFYSNESAANRTKSKMAKF 167
           CD END + N F   +D +I+      +   A+    ++  +RT   +A+F
Sbjct: 591 CDKENDHVINRFRLAND-RIHEIELKPLSFNAVNSYVQATLHRTDDGLARF 640


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 265 KIYNAACSRIENTAIFYSNESAANRTKSKMAKFLRL 158
           +IY   CS + N A+  S+     RT S+  K +RL
Sbjct: 476 QIYELVCSFVNNVAVMESSSEKQLRT-SRCLKIVRL 510


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 235 ENTAIFYSNESAANRTKSKMAKFLRLYFCPCCTCLY 128
           +NT I ++N+S   RTK+  A   RL       C Y
Sbjct: 362 KNTGIIFANDSNKARTKALSANIHRLGVRNAIVCNY 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,884
Number of Sequences: 5004
Number of extensions: 59543
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)