Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14j06
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0289 + 2170820-2170880,2170997-2171070,2171312-2171420,217... 36 0.023
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562... 33 0.28
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 32 0.49
11_01_0286 + 2128109-2128175,2128264-2128337,2128566-2128674,212... 31 0.64
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899... 31 1.1
02_05_0735 + 31322033-31322201,31322702-31322795,31322902-313229... 31 1.1
10_01_0162 + 1820761-1821855 29 2.6
06_01_1059 + 8512335-8513444 29 4.5
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099... 28 7.9
04_04_1486 + 33918611-33918955 28 7.9
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48... 28 7.9
>12_01_0289 +
2170820-2170880,2170997-2171070,2171312-2171420,
2171464-2171508,2171835-2171917,2172069-2172227,
2173454-2173555,2173639-2173788
Length = 260
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = -2
Query: 556 WPSDSDITVLRMKKCLTNDALKRNDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINM 377
WP + I V ++ + + +DG D F D L +KQS T K+ ++
Sbjct: 86 WPLNVQICVGSSEELPVSAFCRTSDGE-WDAFRSIDMDVEARLMQQMKQSSTKQKNHVDS 144
Query: 376 EEYLLPLTSWEKVDQENK 323
+E L+ L +W ++D++ +
Sbjct: 145 DE-LIALNAWHRIDRQTR 161
>01_05_0714 +
24555494-24555637,24555884-24556071,24556195-24556280,
24556359-24556461,24556798-24557000,24557077-24557681,
24557784-24557918,24558040-24558067,24559517-24559596,
24559873-24559975,24560553-24560635,24560915-24561017,
24561596-24561720,24562001-24562103,24562647-24562726,
24563322-24563429,24563521-24563565
Length = 773
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Frame = -2
Query: 487 NDGNPGDGF---HQPDTSSMVNL---ATLIKQSRTPSKHSINMEEYLLPL 356
++ NP DG QP +S + + + L+K+ T S+HS+++EE ++P+
Sbjct: 400 SESNPPDGVTTDEQPTENSPIGVDRDSELVKEKGTSSRHSVSLEEDVMPI 449
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = -2
Query: 523 MKKCLTNDALKRNDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWE 344
+K C +D +K N G + D+S +++ ++ R K +++ L L
Sbjct: 343 VKNCSRSDDVKSNKETVGPELERQDSSKSIHVD---QRPRNEIKQPKIIKKILTTLREES 399
Query: 343 KVDQENKPCDLENDKINNPFN 281
K+ Q N P K+N+P N
Sbjct: 400 KLRQNNSPIRASRVKLNSPSN 420
>11_01_0286 +
2128109-2128175,2128264-2128337,2128566-2128674,
2129138-2129220,2129333-2129491,2130407-2130508,
2130595-2130741
Length = 246
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 469 DGFHQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENK 323
D F D L +KQS T K+ ++ +E L+ L SW +D++ +
Sbjct: 101 DAFRSIDMDVEARLVQQMKQSSTKQKNHLDRDE-LVALNSWHHIDRQTR 148
>05_05_0292 +
23889536-23889568,23889753-23889828,23889932-23889996,
23890235-23890294,23890391-23890473,23890584-23890688,
23890942-23891566,23892008-23892198,23892292-23892400,
23892602-23892750,23892810-23892824,23893139-23893365,
23893464-23893477
Length = 583
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/73 (24%), Positives = 39/73 (53%)
Frame = -2
Query: 367 LLPLTSWEKVDQENKPCDLENDKINNPFNPKHDLKIYNAACSRIENTAIFYSNESAANRT 188
LL +W+ + ++++ ++E K F + KIY A + + + Y+ E+A ++
Sbjct: 435 LLTENNWDALFEKDQ-LNIER-KSGRVFKGWSEEKIYFAPTYKYSSNSDSYAGETATSKK 492
Query: 187 KSKMAKFLRLYFC 149
K + +L+LY+C
Sbjct: 493 KRRTPAWLQLYWC 505
>02_05_0735 +
31322033-31322201,31322702-31322795,31322902-31322954,
31323560-31323915,31324183-31324394,31324761-31325043
Length = 388
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 304 DKINNPFNPKHDLKIYNAACSRIENTAIFYSNESAANRTKSKMAKFLRLYFC 149
D N F+ + KIY A+C + ++ IF S++ TKSK+ + + C
Sbjct: 183 DYPNTGFDLDENDKIYMASCRVVVSSCIFGSSDYLRRPTKSKIGPYSKKNVC 234
>10_01_0162 + 1820761-1821855
Length = 364
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -2
Query: 550 SDSDITVLRMKKCLTNDALKRNDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINMEE 371
++ D T+ + L+R G + +P S +++ R P+ H + M E
Sbjct: 221 AEHDSTLWKPMYTKLRSQLRRRLRFLGVSYGEPTAVSWKARYVAVRRRRVPAAHDVFMGE 280
Query: 370 YLLP-LTSWEKV 338
LLP +T W +V
Sbjct: 281 ILLPVMTEWMRV 292
>06_01_1059 + 8512335-8513444
Length = 369
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 445 SSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINNPFNPKH 272
S +N+ IK S T + +N+E+ P+ + QEN E N +NP H
Sbjct: 265 SQQLNIGGEIK-SETNGSNEVNIEQANQPVPVQQDQSQENNSSGREQQVCFNCYNPGH 321
>08_02_0021 +
11307795-11308093,11308454-11308556,11309623-11309931,
11310190-11310618
Length = 379
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 151 CPCCTCLYRMEKNDKIREEHSIYYAQCT*FLK*LYH 44
CPC CL R+ + E+H Y + + + +YH
Sbjct: 276 CPCRWCLNRIHRQKGHVEDHLYIYGIASTYTRWIYH 311
>04_04_1486 + 33918611-33918955
Length = 114
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 533 RIKNEKVLDQRCSEKK*WKSWGWFPP 456
RI NE R S + W+ WGW PP
Sbjct: 78 RIGNED--GSRASSSQRWRRWGWPPP 101
>03_01_0058 -
478708-478731,478802-478834,478953-479100,479423-480072
Length = 284
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 451 LVGGNHPQDFHHFFSEH---RWSSTFSFLIRLYLNRLAKKQHQA 573
L GG D+HHF H +SS F+F +Y + H+A
Sbjct: 230 LYGGVEYHDYHHFVGGHSQSNFSSVFTFCDYIYGTDRGYRYHKA 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,552,541
Number of Sequences: 37544
Number of extensions: 329907
Number of successful extensions: 744
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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