Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14j06
(677 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 25 0.50
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 25 0.50
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 25 0.50
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 25 0.50
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 25 0.66
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 24 1.2
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 2.0
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 2.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 2.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 2.0
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 4.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.2
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 21 8.2
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 130 RDKYNKDKSTDAKILPSLILYDLPRFH*NRKLQYF 234
RD+ +++S + KI+ SL+ + + +KLQY+
Sbjct: 290 RDRTERERSREPKIISSLLNNTIHNNNNYKKLQYY 324
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 130 RDKYNKDKSTDAKILPSLILYDLPRFH*NRKLQYF 234
RD+ +++S + KI+ SL+ + + +KLQY+
Sbjct: 301 RDRTERERSREPKIISSLLNNTIHNNNNYKKLQYY 335
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 130 RDKYNKDKSTDAKILPSLILYDLPRFH*NRKLQYF 234
RD+ +++S + KI+ SL+ + + +KLQY+
Sbjct: 301 RDRTERERSREPKIISSLLNNTIHNNNNYKKLQYY 335
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 25.4 bits (53), Expect = 0.50
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 130 RDKYNKDKSTDAKILPSLILYDLPRFH*NRKLQYF 234
RD+ +++S + KI+ SL+ + + +KLQY+
Sbjct: 290 RDRTERERSREPKIISSLLNNTIHNNNNYKKLQYY 324
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 25.0 bits (52), Expect = 0.66
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 283 NPKHDLKIYNAACSRIENT 227
NP H +Y A C RIENT
Sbjct: 471 NPSH---MYRAVCGRIENT 486
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 24.2 bits (50), Expect = 1.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 130 RDKYNKDKSTDAKILPSLILYDLPRFH*NRKLQYFLCDCMQ 252
RD+ +++S + KI+ SL + + N+KL Y + + Q
Sbjct: 301 RDRIERERSREPKIISSLSNNTIHNNNYNKKLYYNIINIEQ 341
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.4 bits (48), Expect = 2.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 290 IINFIVF*IAWFVFLIYFF 346
+I I F +A+F+FL +FF
Sbjct: 464 VIARITFPVAYFMFLTFFF 482
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.4 bits (48), Expect = 2.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 290 IINFIVF*IAWFVFLIYFF 346
+I I F +A+F+FL +FF
Sbjct: 450 VIARITFPVAYFMFLTFFF 468
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.4 bits (48), Expect = 2.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 290 IINFIVF*IAWFVFLIYFF 346
+I I F +A+F+FL +FF
Sbjct: 484 VIARITFPVAYFMFLTFFF 502
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.4 bits (48), Expect = 2.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 290 IINFIVF*IAWFVFLIYFF 346
+I I F +A+F+FL +FF
Sbjct: 433 VIARITFPVAYFMFLTFFF 451
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.2 bits (45), Expect = 4.7
Identities = 14/57 (24%), Positives = 22/57 (38%)
Frame = -2
Query: 460 HQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINN 290
H T V + + TP+ I+M +P+TS +E D IN+
Sbjct: 822 HCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVIND 878
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 80 RTMYIIFEIIVPYLVQ*IMNMNLL 9
RT+Y F +IVP ++ I +M LL
Sbjct: 193 RTLYYFFNLIVPCVL--ISSMALL 214
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 80 RTMYIIFEIIVPYLVQ*IMNMNLL 9
RT+Y F +IVP ++ I +M LL
Sbjct: 193 RTLYYFFNLIVPCVL--ISSMALL 214
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 80 RTMYIIFEIIVPYLVQ*IMNMNLL 9
RT+Y F +IVP ++ I +M LL
Sbjct: 193 RTLYYFFNLIVPCVL--ISSMALL 214
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 80 RTMYIIFEIIVPYLVQ*IMNMNLL 9
RT+Y F +IVP ++ I +M LL
Sbjct: 193 RTLYYFFNLIVPCVL--ISSMALL 214
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 80 RTMYIIFEIIVPYLVQ*IMNMNLL 9
RT+Y F +IVP ++ I +M LL
Sbjct: 193 RTLYYFFNLIVPCVL--ISSMALL 214
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 80 RTMYIIFEIIVPYLVQ*IMNMNLL 9
RT+Y F +IVP ++ I +M LL
Sbjct: 193 RTLYYFFNLIVPCVL--ISSMALL 214
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 80 RTMYIIFEIIVPYLVQ*IMNMNLL 9
RT+Y F +IVP ++ I +M LL
Sbjct: 261 RTLYYFFNLIVPCVL--ISSMALL 282
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 80 RTMYIIFEIIVPYLVQ*IMNMNLL 9
RT+Y F +IVP ++ I +M LL
Sbjct: 261 RTLYYFFNLIVPCVL--ISSMALL 282
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 445 SSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINNP-FNP 278
+++++ I+++ P+ I ++ + + W+ N L+ND+ +P NP
Sbjct: 38 NTLISNGDYIEENNMPNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNP 94
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,290
Number of Sequences: 438
Number of extensions: 4344
Number of successful extensions: 47
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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