Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j04
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   1.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   3.7  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    25   4.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   4.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   8.6  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 62  LQECLPHSTATPFWLAPVNL 121
           L   L     TP+WLAP+NL
Sbjct: 742 LSTSLEQQIPTPYWLAPLNL 761


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 11  NGFLPMTPGLPSTXAASLQECLPHSTATP 97
           N F P TP  P     ++   LPHS A+P
Sbjct: 204 NSFPPTTP-YPPANDTTVNSSLPHSFASP 231


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 97  WGGCGMRQTLLERSRXRGWQPWGH 26
           W G GMR TL E++R      WGH
Sbjct: 402 WFG-GMRITLPEKARFEIEMQWGH 424


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 161 GVVIGHKPCMFLRPGLPVPAKMGWLWNAADTPGAKPRXWMAALGSLVKSR 12
           GV+ G +   FL      P  +G +W  AD   A+ R ++   G ++  R
Sbjct: 26  GVITGEEAVPFLEKSGLAPQVLGQIWQIAD---AENRGFLTFSGFVIAMR 72


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 94  GGCGMRQTLLERSRXRGWQPW 32
           GGCG  Q  + +   R W  W
Sbjct: 173 GGCGAAQPTIRKDGLRLWGSW 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,491
Number of Sequences: 5004
Number of extensions: 23494
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)