Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j04
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0873 - 28905240-28906061                                         30   0.65 
04_03_0046 + 10114402-10114535,10116438-10117365                       29   0.86 
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801...    28   2.6  
03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689           27   3.5  
03_05_0675 + 26630466-26632070                                         27   4.6  
09_04_0642 - 19174274-19174783                                         27   6.1  
03_02_0512 - 9021961-9022428                                           27   6.1  
12_01_1071 - 11090506-11090808                                         26   8.1  
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    26   8.1  
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422...    26   8.1  

>04_04_0873 - 28905240-28906061
          Length = 273

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 22  TNDPRAAIHX--RGFAPGVSAAFHSHPILAGTGKPGL-KNMHGLWPM 153
           +N  R AIH   +GFA G+ AA H +P    T   GL  +   + PM
Sbjct: 50  SNSTREAIHATEQGFAVGMHAALHINPYYGKTSVEGLISHFEAVLPM 96


>04_03_0046 + 10114402-10114535,10116438-10117365
          Length = 353

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 22  TNDPRAAIHX--RGFAPGVSAAFHSHPILAGTGKPGL-KNMHGLWPM 153
           +N  R AIH   +GFA G+ AA H +P    T   GL  +   + PM
Sbjct: 130 SNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLISHFEAVLPM 176


>01_07_0054 -
           40779336-40779599,40779734-40779848,40779998-40780181,
           40780322-40780393,40780485-40780611,40780830-40781011,
           40781099-40781249
          Length = 364

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 43  IHXRGFAPGVSAAFHSHPILAGTGKPGLKNMHGLWPMT 156
           +H    APGV   F     +A     GL ++H L P T
Sbjct: 152 LHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPT 189


>03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689
          Length = 328

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 168 SSRSRHRPQAV-HVFKTRFTGASQNGVAVECGRHS---WSEAAXVDGSPGV 28
           ++ +R R QAV H F+     A++   AV  G  +   WS+AA V   PGV
Sbjct: 35  ATAARRRSQAVAHQFQASTRRAARRWQAVARGSQAAARWSQAAPVAAVPGV 85


>03_05_0675 + 26630466-26632070
          Length = 534

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 23  PMTPGLPSTXAASLQECLPHSTATPFWLAP 112
           P+    P + AA    C      TP+W+AP
Sbjct: 191 PINHAPPPSGAALSSSCFNDMAGTPYWMAP 220


>09_04_0642 - 19174274-19174783
          Length = 169

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 195 EIQLHFW*CSSRSRHRPQAVHVFKT 121
           E+  H W C SR R    A H F T
Sbjct: 107 EVSFHLWLCDSRKRLTKAARHGFDT 131


>03_02_0512 - 9021961-9022428
          Length = 155

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 113 PVPAKMGWLWNAADTPGAKPRXWMAALGSLVKSRC 9
           P P   GWL  A  TP A+P    A+L S  +S C
Sbjct: 116 PAPCGGGWLHPALSTPVAEP----ASLVSFFQSHC 146


>12_01_1071 - 11090506-11090808
          Length = 100

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/51 (27%), Positives = 18/51 (35%)
 Frame = -3

Query: 162 RSRHRPQAVHVFKTRFTGASQNGVAVECGRHSWSEAAXVDGSPGVIGKKPL 10
           R RHR  A       +TG    G   +     W EA     S G +   P+
Sbjct: 43  RERHRDGAAAALNVSYTGRGDGGSQRQRREEGWREADPAPVSLGRVDLSPV 93


>10_08_0267 - 16333239-16333820,16333904-16334842,16334920-16335172,
            16336837-16337063,16338189-16339388
          Length = 1066

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 44   STXAASLQECLPH--STATPFWLAPVNLVLKTCTACGR 151
            +T A +++    H  +T TP WL+  +   K C ACG+
Sbjct: 983  NTAAKAVERRCTHCGTTKTPAWLSGPDSRGKLCNACGK 1020


>01_03_0076 -
           12241408-12241545,12241719-12241790,12242173-12242289,
           12243307-12245127,12245361-12245810
          Length = 865

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 2   HFRNGFLPMTPGLPSTXAASLQECLPHSTATPFWLAPVNLVLK 130
           HF NG    T  LPS+ AA      P    +P+ L   + VLK
Sbjct: 111 HFLNGVATPTSHLPSSAAAPPPPPPPPPEESPYVLFSAHKVLK 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,202,612
Number of Sequences: 37544
Number of extensions: 177380
Number of successful extensions: 587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)