Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j04
         (368 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044889-1|AAH44889.1|  462|Homo sapiens suppressor of variegati...    31   1.2  
BC019313-1|AAH19313.1|  347|Homo sapiens SUV420H2 protein protein.     31   1.2  
BC005842-1|AAH05842.1|  347|Homo sapiens SUV420H2 protein protein.     31   1.2  
AY923173-1|AAX30054.1|   93|Homo sapiens kallikrein 13 splice va...    29   4.7  
AY923172-1|AAX30053.1|   93|Homo sapiens kallikrein 13 splice va...    29   4.7  
BC126479-1|AAI26480.1|  200|Homo sapiens chromosome 4 open readi...    29   6.2  
BC126477-1|AAI26478.1|  200|Homo sapiens chromosome 4 open readi...    29   6.2  
AK054839-1|BAB70812.1|  200|Homo sapiens protein ( Homo sapiens ...    29   6.2  

>BC044889-1|AAH44889.1|  462|Homo sapiens suppressor of variegation
           4-20 homolog 2 (Drosophila) protein.
          Length = 462

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 36  GCHPRSRLRSRSVCRIPQPPHFGW 107
           GC P  RLR  ++  + QPPH  W
Sbjct: 361 GCGPHCRLRGEALVALGQPPHARW 384


>BC019313-1|AAH19313.1|  347|Homo sapiens SUV420H2 protein protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 36  GCHPRSRLRSRSVCRIPQPPHFGW 107
           GC P  RLR  ++  + QPPH  W
Sbjct: 246 GCGPHCRLRGEALVALGQPPHARW 269


>BC005842-1|AAH05842.1|  347|Homo sapiens SUV420H2 protein protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 36  GCHPRSRLRSRSVCRIPQPPHFGW 107
           GC P  RLR  ++  + QPPH  W
Sbjct: 246 GCGPHCRLRGEALVALGQPPHARW 269


>AY923173-1|AAX30054.1|   93|Homo sapiens kallikrein 13 splice
           variant 6 protein.
          Length = 93

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 137 CMFLRPGLPVPAKMGWLWNAADTP 66
           C  L PG  +  K+GWL+++ DTP
Sbjct: 56  CGCLAPGTILGLKVGWLFSSGDTP 79


>AY923172-1|AAX30053.1|   93|Homo sapiens kallikrein 13 splice
           variant 5 protein.
          Length = 93

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 137 CMFLRPGLPVPAKMGWLWNAADTP 66
           C  L PG  +  K+GWL+++ DTP
Sbjct: 56  CGCLAPGTILGLKVGWLFSSGDTP 79


>BC126479-1|AAI26480.1|  200|Homo sapiens chromosome 4 open reading
           frame 38 protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -1

Query: 140 PCMFLRPGLPVPAKMGWLWNAADT----PGAKPR 51
           P   L PGLP   + GW W   D+    P A+PR
Sbjct: 43  PRKLLVPGLPCLVRGGWPWTRPDSSPFRPAARPR 76


>BC126477-1|AAI26478.1|  200|Homo sapiens chromosome 4 open reading
           frame 38 protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -1

Query: 140 PCMFLRPGLPVPAKMGWLWNAADT----PGAKPR 51
           P   L PGLP   + GW W   D+    P A+PR
Sbjct: 43  PRKLLVPGLPCLVRGGWPWTRPDSSPFRPAARPR 76


>AK054839-1|BAB70812.1|  200|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30277 fis, clone BRACE2002752. ).
          Length = 200

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -1

Query: 140 PCMFLRPGLPVPAKMGWLWNAADT----PGAKPR 51
           P   L PGLP   + GW W   D+    P A+PR
Sbjct: 43  PRKLLVPGLPCLVRGGWPWTRPDSSPFRPAARPR 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,237,560
Number of Sequences: 237096
Number of extensions: 1048483
Number of successful extensions: 2819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)