Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j04
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    28   1.8  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    28   1.8  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    28   1.8  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    28   1.8  
U41994-5|ABB88206.1|  163|Caenorhabditis elegans Hypothetical pr...    27   4.2  

>U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical
           protein C17H11.2 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 146 HKPCMFLRPGLPVPAKMGWL 87
           +K C  LRPG+PVP  M  L
Sbjct: 155 YKKCQMLRPGVPVPRPMSLL 174


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   HFRNGFLPMTPGLPSTXAASLQECLPHSTATP 97
           H  NG +P TP +    A +     P +TATP
Sbjct: 390 HIANGSIPGTPSVAQESAKATPAATPAATATP 421


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   HFRNGFLPMTPGLPSTXAASLQECLPHSTATP 97
           H  NG +P TP +    A +     P +TATP
Sbjct: 340 HIANGSIPGTPSVAQESAKATPAATPAATATP 371


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   HFRNGFLPMTPGLPSTXAASLQECLPHSTATP 97
           H  NG +P TP +    A +     P +TATP
Sbjct: 390 HIANGSIPGTPSVAQESAKATPAATPAATATP 421


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   HFRNGFLPMTPGLPSTXAASLQECLPHSTATP 97
           H  NG +P TP +    A +     P +TATP
Sbjct: 390 HIANGSIPGTPSVAQESAKATPAATPAATATP 421


>U41994-5|ABB88206.1|  163|Caenorhabditis elegans Hypothetical
           protein F59A6.11 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 116 LPVPA-KMGWLWNAADTPGAKPRXWMAALGSLVKSRCEN 3
           +PVPA   G LW  A  PG+ P    A L  L    CE+
Sbjct: 81  IPVPADSAGSLWVHAQKPGSTPPGSFADLQELFGIICED 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,433,415
Number of Sequences: 27780
Number of extensions: 145509
Number of successful extensions: 337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)