Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j04
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   0.87 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.1  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 147 PQAVHVFKTRFTGASQNGVAVECGRHSW 64
           PQ +H  +TR        + ++ G  SW
Sbjct: 40  PQRIHTVRTRGGNKKYRALRLDTGNFSW 67


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 100 KWGGCGMRQTLLERSRXRGWQPWGHW 23
           K+G   M +TL    R R    WG++
Sbjct: 191 KYGQLFMEETLKAAKRMRPAANWGYY 216


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = +2

Query: 32   PGLPSTXAASLQECLPHSTATP--FWLAP 112
            PG       S  E +PH   TP  FW  P
Sbjct: 1139 PGPNGIKMPSFMEGMPHLPFTPFNFWNPP 1167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,845
Number of Sequences: 438
Number of extensions: 1890
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)