Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j03
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21...    40   5e-04
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    27   5.3  

>06_01_0021 -
           214401-214613,214707-214790,214887-215041,215165-215234,
           215334-215509,215631-215803,216715-216938
          Length = 364

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
           AFMFES+L   + +W  ++  + D  YY+CW  L  HFS
Sbjct: 313 AFMFESALIPRVCQWALDSPSR-DLDYYQCWIGLKSHFS 350


>03_01_0224 -
           1771582-1771727,1771855-1771980,1772489-1772517,
           1772689-1772747,1772816-1772929,1773030-1773238,
           1773347-1774087,1775678-1776238,1776295-1776419,
           1778187-1778317,1779020-1779178,1779471-1779728,
           1780140-1780164,1780531-1780592,1780944-1781003,
           1781112-1781219,1781703-1781838,1781880-1781929,
           1782024-1782096,1782209-1782345,1782441-1782527,
           1782624-1782721,1783259-1783369,1783685-1783769,
           1783880-1783969
          Length = 1259

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -2

Query: 342 DVKNDTCHTKSYFVNKIRLLLYPRNALAGFANIRNIWGPIFDRFPR---PTW*WPDSKKI 172
           +++  T  T   F ++IR++L  + A A + ++R+ WGP    FPR     W   D+K+ 
Sbjct: 570 NIRTPTNRTLYTFDSRIRIML--KYAFA-WRSLRSTWGPTPPPFPRLADSPWAPTDAKES 626

Query: 171 Q 169
           Q
Sbjct: 627 Q 627


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,994,369
Number of Sequences: 37544
Number of extensions: 175327
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)