Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14j03
(349 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93778-8|CAB07848.4| 437|Caenorhabditis elegans Hypothetical pr... 47 4e-06
AL034364-5|CAA22255.4| 437|Caenorhabditis elegans Hypothetical ... 47 4e-06
AF136150-1|AAF61419.1| 437|Caenorhabditis elegans homogentisate... 47 4e-06
U95181-1|AAD00776.1| 437|Caenorhabditis elegans 2,5 dihydroxyph... 46 1e-05
U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein... 27 3.7
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 27 3.7
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 3.7
AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protei... 27 3.7
AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protei... 27 3.7
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 27 3.7
AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical ... 27 4.9
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 26 6.4
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 26 6.4
>Z93778-8|CAB07848.4| 437|Caenorhabditis elegans Hypothetical
protein W06D4.1 protein.
Length = 437
Score = 46.8 bits (106), Expect = 4e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
+FMFESSL++AIT W Q +D YY+ WQ L KHF+
Sbjct: 398 SFMFESSLNMAITNWA--VYQNVDKDYYKDWQPLKKHFT 434
>AL034364-5|CAA22255.4| 437|Caenorhabditis elegans Hypothetical
protein W06D4.1 protein.
Length = 437
Score = 46.8 bits (106), Expect = 4e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
+FMFESSL++AIT W Q +D YY+ WQ L KHF+
Sbjct: 398 SFMFESSLNMAITNWA--VYQNVDKDYYKDWQPLKKHFT 434
>AF136150-1|AAF61419.1| 437|Caenorhabditis elegans homogentisate
1,2-dioxygenase protein.
Length = 437
Score = 46.8 bits (106), Expect = 4e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
+FMFESSL++AIT W Q +D YY+ WQ L KHF+
Sbjct: 398 SFMFESSLNMAITNWA--VYQNVDKDYYKDWQPLKKHFT 434
>U95181-1|AAD00776.1| 437|Caenorhabditis elegans 2,5
dihydroxyphenylacetate oxidase protein.
Length = 437
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 159 AFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 275
+FMFESSL++AIT W Q +D YY+ WQ L KH++
Sbjct: 398 SFMFESSLNMAITNWA--VYQNVDKDYYKDWQPLKKHYT 434
>U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform c protein.
Length = 558
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
E W+ + +F+ K+ F QNK+L
Sbjct: 68 EAWEKIQAYFNQNGKIIFVCQNKLL 92
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
E W+ + +F+ K+ F QNK+L
Sbjct: 142 EAWEKIQAYFNQNGKIIFVCQNKLL 166
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
E W+ + +F+ K+ F QNK+L
Sbjct: 561 EAWEKIQAYFNQNGKIIFVCQNKLL 585
>AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant d protein.
Length = 558
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
E W+ + +F+ K+ F QNK+L
Sbjct: 68 EAWEKIQAYFNQNGKIIFVCQNKLL 92
>AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant c protein.
Length = 558
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
E W+ + +F+ K+ F QNK+L
Sbjct: 68 EAWEKIQAYFNQNGKIIFVCQNKLL 92
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 243 ECWQNLPKHFSDKAKV*FYSQNKIL 317
E W+ + +F+ K+ F QNK+L
Sbjct: 142 EAWEKIQAYFNQNGKIIFVCQNKLL 166
>AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical
protein K06H6.4 protein.
Length = 467
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 12 YNKSSCSNRYLHQYKNEI*HKFKKII*SNSSRACILNPN 128
YN S+ RY + EI F+ +I S+ C L PN
Sbjct: 109 YNSSTMYCRYYDCRRREISDPFQNVIFHKSTVFCALRPN 147
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/34 (23%), Positives = 16/34 (47%)
Frame = +1
Query: 232 PNITNVGKTCQSISRIKQKSNFIHKIRFCMTCII 333
P + K C + + ++ H+ ++C TC I
Sbjct: 22 PGVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFI 55
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/34 (23%), Positives = 16/34 (47%)
Frame = +1
Query: 232 PNITNVGKTCQSISRIKQKSNFIHKIRFCMTCII 333
P + K C + + ++ H+ ++C TC I
Sbjct: 130 PGVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFI 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,356,703
Number of Sequences: 27780
Number of extensions: 172335
Number of successful extensions: 414
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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