Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14i24
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 62 8e-11
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 55 1e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 51 2e-07
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 48 1e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 47 2e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 7e-06
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 42 7e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 3e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.002
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 37 0.002
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 36 0.004
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.007
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.013
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.017
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 34 0.017
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.12
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 31 0.12
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.21
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.65
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.65
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.86
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 1.5
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.0
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 3.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 3.5
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 26 6.0
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 25 8.0
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 62.1 bits (144), Expect = 8e-11
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Frame = -3
Query: 630 TITTGPTKLLVSNLDFGVSDSDIKELF-SEFGILKSASVHYDRSGRSLGTADVVFERKAD 454
++ + +K++VSNL V+++ +KELF G K S+ Y +GRS G A ++F R D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 453 AVKAMKQYNGVPLDG-RAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKRGGGGIR 277
A +A +QY G +DG R M +++ L A R+ AS + K G +
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAA-RVSPASNASATAS--KNGAKSSK 165
Query: 276 NQXXXXXXXXXXXXXXXXXXGKRPVPTAEQLDAELDAY 163
+ RP +AE+LD E+D Y
Sbjct: 166 RK-----------TTRRRRTPNRPKKSAEELDKEMDDY 192
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 54.8 bits (126), Expect = 1e-08
Identities = 29/109 (26%), Positives = 51/109 (46%)
Frame = -3
Query: 609 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQY 430
+L VSN+ F ++D D+K +F FG ++ + D RS G + + A A+++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 429 NGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKRGGGG 283
NG L GR M + L + T + + ++ R+ P + GG
Sbjct: 401 NGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQERSQPSQRNGG 449
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 427
+ V NL + SD ++ +LF++ G + A + Y+ +GRS G V FE + DA ++++ N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 426 GVPLDGRAMNIQLA 385
G GR + + A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -3
Query: 591 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 412
L + V D+K+LF + G + A + ++ GRS G VV +A+ A++ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 411 GRAMNIQL 388
GR + ++L
Sbjct: 250 GRTLEVRL 257
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 48.4 bits (110), Expect = 1e-06
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -3
Query: 687 WKHDMFN--DFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVH 514
W+HD+ D R + + V NL + V + D+ LF F ++ ++
Sbjct: 58 WQHDLDQEQDAHPRTTHLQKRQHSENRFGVRVENLHYQVLEKDVLSLFENFHPIR-VIMN 116
Query: 513 YDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNI 394
YDR+GRS G+ DV FE DA A K L G + I
Sbjct: 117 YDRAGRSEGSCDVYFETSQDAEDAQKTLQSTNLKGSEIQI 156
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 47.2 bits (107), Expect = 2e-06
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 430
+ +S L + +SDI+ F+ +G ++ V ++ +G+S+G A VVFER+ D A K
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 429 NGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGT--IRNNPKRGGG 286
G+ L+GR + + + T++ ++GG +GG + P+R G
Sbjct: 162 AGLMLNGRRIVVDVERG--RTVKGWLPRKLGG-GLGGRHYTKERPRRERG 208
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 45.6 bits (103), Expect = 7e-06
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 430
+ V L + V D + + F E+G + A V D +SGRS G V FE +A KA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP-EAAKAAVAA 323
Query: 429 NGVP-LDGRAMNIQLATSEINTLRPEARNRIG 337
NG +DGR +N+ L+ +P A+ R G
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG 355
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 42.3 bits (95), Expect = 7e-05
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -3
Query: 636 SGTITTGPTKLLVSNLDFGV--SDSDIKELFSEFGILKSASV-HYDRSGRSLGTADVVFE 466
+ T T P L V NLD + + ++ELFS+FG +KS ++ Y + S G V F
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Query: 465 RKADAVKAMKQYNGV 421
+AV+A+ NGV
Sbjct: 471 HPFEAVQAINTLNGV 485
Score = 32.3 bits (70), Expect = 0.070
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Frame = -3
Query: 657 ERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGT-- 484
E+ ++N + + V NL SD+ ELF FG + + +S +
Sbjct: 5 EKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKS 64
Query: 483 ----ADVVFERKADAVKAMKQYNGVPLDGRAMNIQ 391
A + FE K A A+ NG G + ++
Sbjct: 65 PTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -3
Query: 609 KLLVSNLDFGVSDSD-IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 433
+L++ NL + + ++ FS+FG ++ + GR G A V + + A +AM
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 432 YNGVPLDGRAMNIQLATSE 376
NG +DGR + + A S+
Sbjct: 168 LNGTEIDGRPIAVDWAVSK 186
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEF-GILKS---ASVHYDRSGR--SLGTADVVFERKADAVK 445
+ V NL+F + +++F G L + A R G+ S+G V F+ KA AV
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 444 AMKQYNGVPLDGRAMNIQLA 385
AM NG LDG + I+L+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLS 700
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGIL 532
LLV N +G S ++ LFS FG L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 430
+ + NLDF +++ DI +FSEFG ++ D+ +G+S G A + +E + V A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 429 NGVPLDGRAMNI-QLATSEINTLRPEARNRIGGASVGGTI 313
V L R + + +A+ ++ E N + G ++
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKEPANLVPLGESGSSL 132
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/87 (22%), Positives = 41/87 (47%)
Frame = -3
Query: 654 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADV 475
R+ Q + T + + NLD +++ + +LF +FG + S S+ D++ + G V
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFV 306
Query: 474 VFERKADAVKAMKQYNGVPLDGRAMNI 394
+ A KA+ + N G+ + +
Sbjct: 307 NYANHECAQKAVDELNDKEYKGKKLYV 333
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = -3
Query: 564 IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 385
++ LF +G K V ++ R G A VVF+ +A +A+K G PL G+ M IQ +
Sbjct: 46 LEHLFGSYG--KVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYS 103
Query: 384 TSE 376
S+
Sbjct: 104 KSK 106
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = -3
Query: 618 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 439
GPT +++ NL G S D+ FG + + V+ D G+ A V F A A + +
Sbjct: 98 GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGKV--RASVRFSTLASAQQVV 154
Query: 438 KQYNGVPLDG 409
++ +GV DG
Sbjct: 155 QKLDGVTADG 164
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 430
L V L+ D D++ +FS FG + S V D+ +G SL A + F+ K KA +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 429 NGVPLDGRAMNIQLATS 379
V +D +++ + S
Sbjct: 306 QNVLIDDSRIHVDFSQS 322
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/61 (27%), Positives = 35/61 (57%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 427
L + NL F ++ ++ +LF +G ++ + + ++ GTA VV+E DA +A ++ +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ--IRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 426 G 424
G
Sbjct: 72 G 72
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 34.3 bits (75), Expect = 0.017
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGTADVVFERKADAVKAMK 436
L V NLDF +D+D+KE F + G I + + ++ +G+ G V F +KAM+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 34.3 bits (75), Expect = 0.017
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 427
L +SN+D VS++DIK LF + + SA V G S A + ++D A +
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFI-SARVLRCVDGTSTSIAFIWLANESDIQNAQVEMQ 133
Query: 426 GVPLDGRAMNIQLATSEINT 367
G R++ + S+ NT
Sbjct: 134 GAFCLKRSILVHSVKSDKNT 153
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 430
L VS + + + +++++FS+FG + + + + S G + F +A A+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 429 NGVPLDGRAMNIQLA 385
N GR +N+Q A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 430
L V+NL + ++++LF FG ++ + D+ +GR+ G A V + + A+KA +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 429 NG 424
+G
Sbjct: 264 DG 265
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.21
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = -3
Query: 615 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKA------ 457
PT++ VSN+ V+ ++ F FG + + + +G SLG + F++++
Sbjct: 93 PTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAA 152
Query: 456 -DAVKAMKQYNGVPLDGRAMNIQL 388
A A++Q NG+ G+ +++ L
Sbjct: 153 HSAKIAVQQANGLRFSGKPLSVVL 176
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 0.65
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 430
++V+ + ++ +++LF++FG +K+ ++ D R+G G A + + A KA+ +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 429 NGVPLD 412
N LD
Sbjct: 72 NLSLLD 77
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 0.65
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = -3
Query: 621 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKA 442
T T L +SNL ++SDI LF I+ S V D +S G + + A
Sbjct: 381 TESTNLYISNLPLHWNESDISTLFKPSKII-SNRVLRDSKEQSRGVGFARMQDRKTAEDI 439
Query: 441 MKQYNGVPLDGRAMNIQL 388
+ ++N LD +Q+
Sbjct: 440 INKFNNFVLDPALPPLQI 457
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.7 bits (61), Expect = 0.86
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKE----LFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 439
L V+NL+ ++ +D++ LFS +G + + ++ + G A VVF + A AM
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTV--VDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 438 KQYNGVPLDGRAMNIQLATSE 376
K G+ M IQ A S+
Sbjct: 64 KALKNFIFFGKEMKIQYAHSK 84
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 594 NLDFGVSDSDIKELFSEFGILKSASVHY 511
+LD V D DI+ LFS F I KS +Y
Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 606 LLVSNLDFGVSDSDIKELFSEFGILK 529
L VSNL G S S I LFS +G +K
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVK 27
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 345 RIGGASVGGTIRNNPKRGGGG 283
R GGAS GG R++P+ GG
Sbjct: 882 RRGGASAGGVSRDSPRYSRGG 902
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -3
Query: 558 ELFSEFGILKSASVHYDRSGRSLGT---ADVVFERKADAVKAMKQYNGVPLDGRAMNIQL 388
E F ++G + +++ + S + ++RK DA +A+ +G DGR +
Sbjct: 140 EYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASY 199
Query: 387 ATSEINT 367
T++ T
Sbjct: 200 GTTKYCT 206
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 345 RIGGASVGGTIRNNPKRGGGGIR 277
R+G + G TIRN P R G+R
Sbjct: 30 RLGAPATGITIRNQPIRSYSGLR 52
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 271 LISNSSTSSFRIVSYSTS 324
L+SNS SSFR+ S STS
Sbjct: 263 LLSNSRHSSFRLASSSTS 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,205
Number of Sequences: 5004
Number of extensions: 46340
Number of successful extensions: 156
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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