Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i21
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           24   1.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           24   1.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 461 SPHRQHRAVSARGRVHRQLHPDAPQHVPAG 372
           S H     +  R R + QL P  P+H P G
Sbjct: 44  SVHGHREGLGRRHRYNFQLKPYNPEHKPPG 73


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 461 SPHRQHRAVSARGRVHRQLHPDAPQHVPAG 372
           S H     +  R R + QL P  P+H P G
Sbjct: 45  SVHGHREGLGRRHRYNFQLKPYNPEHKPPG 74


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = +2

Query: 368  GGQQEHAGVHLDAVDDGLVPAQTPHDVAGAATPDEDAAVVGARGDVLGVGPQEVGLLDVR 547
            G QQ H G+H+++    +   Q    V       +   V G +  V GV   + G+  V+
Sbjct: 805  GHQQSHHGLHINSSPSSVQSGQQQQSVL------QGLGVQGVQQGVQGVQTAQ-GVQGVQ 857

Query: 548  GGVAVAQEPTRVXAGRGAELLLQG 619
             GV   Q    V   +G   LLQG
Sbjct: 858  -GVQGVQGVQGVQGVQGVPGLLQG 880


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 426 PRRHRTMLPVRRLQMKMLPS 485
           PR HR    +R++ +K LP+
Sbjct: 325 PRTHRMPQLIRKIFLKYLPT 344


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 SILVSALGGPAGRRVQVAVGA 208
           S LVSA+  PAG ++  + GA
Sbjct: 395 SALVSAVRSPAGGQLPPSAGA 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,540
Number of Sequences: 438
Number of extensions: 3230
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)