Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14i20
(453 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 23 1.6
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 23 1.6
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 1.6
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 2.1
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 2.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 3.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 3.6
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 21 8.3
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 8.3
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 8.3
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 23.0 bits (47), Expect = 1.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 70 AASDTXVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHATGTNL 207
+++D+ P + Y+ V +S PPT+ T+ + H TNL
Sbjct: 880 SSTDSRNPALALAEPYNQRGTV-VSPPPTKRRTMKVVKYHLFLTNL 924
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 23.0 bits (47), Expect = 1.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 70 AASDTXVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHATGTNL 207
+++D+ P + Y+ V +S PPT+ T+ + H TNL
Sbjct: 918 SSTDSRNPALALAEPYNQRGTV-VSPPPTKRRTMKVVKYHLFLTNL 962
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 1.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 102 STSRLLLHGSRAYLRTANTSLNNKHLSRAR 191
ST L G+ +YL T NTS NN L R
Sbjct: 713 STQSLTTTGNVSYLTTNNTS-NNSQLQIPR 741
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.6 bits (46), Expect = 2.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 22 IYAHHGTTARSAEPSSAASDTXVPTAVVRAGYSS 123
+YA A PS VPT+V++A SS
Sbjct: 383 MYASGAQFATPCTPSPPRGPGGVPTSVIQAATSS 416
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.2 bits (45), Expect = 2.7
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 147 TANTSLNNKHLSRARNRDQLDRSNPFYRPGDRTG 248
TA + N A N+ QL PF PG G
Sbjct: 1107 TAAAAATNIRPGTADNKPQLKPQKPFTSPGGIPG 1140
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 147 TANTSLNNKHLSRARNRDQ 203
T + +HL R R RDQ
Sbjct: 1075 TLEYKVKERHLMRPRKRDQ 1093
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 3.6
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 275 VWVVRGLCXARAVPWPIEWIAAVKLVPVACTREVLIVQTRVGGA 144
VW++ C + V W + + L P A +LI + GA
Sbjct: 216 VWIMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGA 259
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 3.6
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 275 VWVVRGLCXARAVPWPIEWIAAVKLVPVACTREVLIVQTRVGGA 144
VW++ C + V W + + L P A +LI + GA
Sbjct: 269 VWIMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGA 312
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 20.6 bits (41), Expect = 8.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Frame = -2
Query: 410 FNQTXFYFIFLLYLSCC 360
F + Y++ +Y+ CC
Sbjct: 237 FKREFSYYLIQIYIPCC 253
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 20.6 bits (41), Expect = 8.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Frame = -2
Query: 410 FNQTXFYFIFLLYLSCC 360
F + Y++ +Y+ CC
Sbjct: 237 FKREFSYYLIQIYIPCC 253
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.6 bits (41), Expect = 8.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 184 VHATGTNLTAAIHSIGQGTARAXHRPLT 267
V G NL A ++ G++ RPL+
Sbjct: 1304 VTVPGNNLIATNTTVSSGSSEDHRRPLS 1331
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,984
Number of Sequences: 438
Number of extensions: 2276
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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