Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i19
         (478 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080131-1|AAD19341.1|  312|Drosophila melanogaster ribosomal pr...    95   4e-20
U42587-1|AAB17433.1|  299|Drosophila melanogaster ribosomal prot...    95   6e-20
BT025837-1|ABF85737.1|  299|Drosophila melanogaster IP11377p pro...    95   6e-20
AY118961-1|AAM50821.1|  299|Drosophila melanogaster LD40873p pro...    95   6e-20
AL132792-4|CAB60023.1|  299|Drosophila melanogaster EG:BACR19J1....    95   6e-20
AE014298-104|AAF45546.1|  299|Drosophila melanogaster CG7434-PA ...    95   6e-20
AY089455-1|AAL90193.1|  312|Drosophila melanogaster AT26853p pro...    67   1e-11
AE013599-3561|AAF46972.1|  312|Drosophila melanogaster CG9871-PA...    67   1e-11
AE013599-1487|AAF58510.2|  246|Drosophila melanogaster CG13154-P...    30   1.4  
BT023938-1|ABB36442.1| 1103|Drosophila melanogaster RE04201p pro...    27   9.9  
AY094813-1|AAM11166.1| 1413|Drosophila melanogaster LD30602p pro...    27   9.9  
AE014134-2739|AAF53547.2| 1413|Drosophila melanogaster CG31738-P...    27   9.9  
AE014134-2738|AAF53546.3| 1700|Drosophila melanogaster CG31738-P...    27   9.9  

>AF080131-1|AAD19341.1|  312|Drosophila melanogaster ribosomal
           protein L22 protein.
          Length = 312

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 46/103 (44%), Positives = 63/103 (61%)
 Frame = -3

Query: 317 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 138
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 203 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLTVSSDVHF 262

Query: 137 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYEXALLQHSXAD 9
           S                 RDW+RVVA+  D+YE    + S  D
Sbjct: 263 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRISSND 305


>U42587-1|AAB17433.1|  299|Drosophila melanogaster ribosomal protein
           Rpl22 protein.
          Length = 299

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 46/103 (44%), Positives = 63/103 (61%)
 Frame = -3

Query: 317 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 138
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 137 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYEXALLQHSXAD 9
           S                 RDW+RVVA+  D+YE    + S  D
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRISSND 292


>BT025837-1|ABF85737.1|  299|Drosophila melanogaster IP11377p
           protein.
          Length = 299

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 46/103 (44%), Positives = 63/103 (61%)
 Frame = -3

Query: 317 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 138
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 137 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYEXALLQHSXAD 9
           S                 RDW+RVVA+  D+YE    + S  D
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRISSND 292


>AY118961-1|AAM50821.1|  299|Drosophila melanogaster LD40873p
           protein.
          Length = 299

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 46/103 (44%), Positives = 63/103 (61%)
 Frame = -3

Query: 317 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 138
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 137 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYEXALLQHSXAD 9
           S                 RDW+RVVA+  D+YE    + S  D
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRISSND 292


>AL132792-4|CAB60023.1|  299|Drosophila melanogaster
           EG:BACR19J1.4,FBgn0015288;RpL22 protein.
          Length = 299

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 46/103 (44%), Positives = 63/103 (61%)
 Frame = -3

Query: 317 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 138
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 137 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYEXALLQHSXAD 9
           S                 RDW+RVVA+  D+YE    + S  D
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRISSND 292


>AE014298-104|AAF45546.1|  299|Drosophila melanogaster CG7434-PA
           protein.
          Length = 299

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 46/103 (44%), Positives = 63/103 (61%)
 Frame = -3

Query: 317 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 138
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 137 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYEXALLQHSXAD 9
           S                 RDW+RVVA+  D+YE    + S  D
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRISSND 292


>AY089455-1|AAL90193.1|  312|Drosophila melanogaster AT26853p
           protein.
          Length = 312

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
 Frame = -3

Query: 311 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKT-KVAITADIPFS 135
           +F IDC   AED ILD+ +FE+YLK H+K++ K N L + V   R K   + I + + FS
Sbjct: 193 RFVIDCACVAEDMILDLADFEQYLKTHIKIKNKLNQLKDQVTFERTKNFSLIIHSGVHFS 252

Query: 134 XXXXXXXXXXXXXXXXXRDWLRVVASAHDAY 42
                            RDWLRVV++A D +
Sbjct: 253 KRYFKYLTKRYLKKVSLRDWLRVVSTAKDTF 283


>AE013599-3561|AAF46972.1|  312|Drosophila melanogaster CG9871-PA
           protein.
          Length = 312

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
 Frame = -3

Query: 311 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKT-KVAITADIPFS 135
           +F IDC   AED ILD+ +FE+YLK H+K++ K N L + V   R K   + I + + FS
Sbjct: 193 RFVIDCACVAEDMILDLADFEQYLKTHIKIKNKLNQLKDQVTFERTKNFSLIIHSGVHFS 252

Query: 134 XXXXXXXXXXXXXXXXXRDWLRVVASAHDAY 42
                            RDWLRVV++A D +
Sbjct: 253 KRYFKYLTKRYLKKVSLRDWLRVVSTAKDTF 283


>AE013599-1487|AAF58510.2|  246|Drosophila melanogaster CG13154-PA
           protein.
          Length = 246

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 455 LLYTCSFATMAVTKKPVAKKAQLH 384
           +L+ C+F    V K P A++AQLH
Sbjct: 12  VLFLCAFCCSVVAKPPTARRAQLH 35


>BT023938-1|ABB36442.1| 1103|Drosophila melanogaster RE04201p
           protein.
          Length = 1103

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 101 GNVLLNT-SGTSLKKECLR**RLSSYPWR 184
           G+  LNT  GT L+ ECL+  R SSY +R
Sbjct: 207 GHGFLNTYKGTELQTECLQLRRASSYQFR 235


>AY094813-1|AAM11166.1| 1413|Drosophila melanogaster LD30602p
           protein.
          Length = 1413

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 101 GNVLLNT-SGTSLKKECLR**RLSSYPWR 184
           G+  LNT  GT L+ ECL+  R SSY +R
Sbjct: 517 GHGFLNTYKGTELQTECLQLRRASSYQFR 545


>AE014134-2739|AAF53547.2| 1413|Drosophila melanogaster CG31738-PA,
           isoform A protein.
          Length = 1413

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 101 GNVLLNT-SGTSLKKECLR**RLSSYPWR 184
           G+  LNT  GT L+ ECL+  R SSY +R
Sbjct: 517 GHGFLNTYKGTELQTECLQLRRASSYQFR 545


>AE014134-2738|AAF53546.3| 1700|Drosophila melanogaster CG31738-PB,
           isoform B protein.
          Length = 1700

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 101 GNVLLNT-SGTSLKKECLR**RLSSYPWR 184
           G+  LNT  GT L+ ECL+  R SSY +R
Sbjct: 804 GHGFLNTYKGTELQTECLQLRRASSYQFR 832


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,470,401
Number of Sequences: 53049
Number of extensions: 329354
Number of successful extensions: 780
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1643002263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)