Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i17
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   1.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   4.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    23   4.2  
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    23   5.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    23   7.4  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    23   7.4  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    22   9.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    22   9.7  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    22   9.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    22   9.7  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 74  NITRQNIVFTGWLVLIPF-LCLH 9
           +I R  + + GW  ++PF LC H
Sbjct: 388 DIIRNEVAYAGWSEVMPFILCSH 410


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 55   MFCLVIFQLKVRVCFFSKLFPTVLNRQTSTLF 150
            M  L+IF L   + +F        NR  STLF
Sbjct: 926  MDLLIIFPLSAAMSYFDPAQNLTSNRPNSTLF 957


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 152 INNVDVCLFRTVGNNFEKKQTLTF 81
           INN+D      + N  EKK+  TF
Sbjct: 749 INNMDETAIHMLMNQLEKKENRTF 772


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 103 SKLFPTVLNRQTSTLFMVLVNSSSKQQLLY 192
           SKLF ++  ++   + MV ++++ K  +LY
Sbjct: 6   SKLFQSLFGKREMRILMVGLDAAGKTTILY 35


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 92   SVFFRNYFRQS*TDRRQHYLWSS 160
            SVF +NY+  S   R   ++WS+
Sbjct: 2191 SVFLQNYWMSSVYGRSWAFMWSA 2213


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 23  MELTPASR*ILCFVW 67
           + LT ASR ILC VW
Sbjct: 736 LNLTCASRVILCDVW 750


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 108 IISDSPKQTDVNIIY 152
           + S SP+Q DVNI++
Sbjct: 778 LTSASPEQVDVNILF 792


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 92   SVFFRNYFRQS*TDRRQHYLW 154
            SVF +N++  S   R   YLW
Sbjct: 2204 SVFLQNFWLSSLNGRSWSYLW 2224


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 107 FEKKQTLTFSWNITRQNIVFTGW 39
           F    T TFS ++T  + VF GW
Sbjct: 490 FRVPVTDTFSLDVTNVDDVFYGW 512


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 4   YKCRHKNGINTSQPVNTMFCLVIFQLKVRVCFFSKLFPTVLNRQTSTLFMVLVNSSSK 177
           YKC+  N   T  P NT+       LK R   F+     V N++   +  +  NS S+
Sbjct: 124 YKCKQLNHQTTHLPTNTV-------LKKR-SLFNDAISIVPNKKKQLVSAISTNSDSQ 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 843,537
Number of Sequences: 5004
Number of extensions: 13418
Number of successful extensions: 34
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)