Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i17
         (196 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   1.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   2.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   3.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          19   4.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   4.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   4.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   4.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   7.1  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              18   9.4  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -3

Query: 185 SCCLLEEFTRTINNVDVCLFRTVGNN---FEKKQTLTFSWNITRQNIVFTGWLVL 30
           S   +E  T+  N ++   F         F        ++ +TRQ ++  GW VL
Sbjct: 92  SVVYIEHLTKLNNAIEEKRFELTNRKGVVFHHDDARPHTYLVTRQKLLELGWDVL 146


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 179 CLLEEFTRTINNVDVC 132
           CLL E  + I  VD C
Sbjct: 14  CLLNETAKAIIGVDEC 29


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 110 YFRQS*TDRR 139
           YFRQS  DRR
Sbjct: 56  YFRQSWVDRR 65


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 71  ITRQNIVFTGWLVL 30
           +TRQ ++  GW VL
Sbjct: 132 VTRQKLLELGWDVL 145


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 96  FFFEIISDSPKQTDVNIIYGPR 161
           F   I +D P +  + I  GP+
Sbjct: 502 FHITINADKPMKAAIRIFIGPK 523


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 96  FFFEIISDSPKQTDVNIIYGPR 161
           F   I +D P +  + I  GP+
Sbjct: 502 FHITINADKPMKAAIRIFIGPK 523


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 90  SLFFFEIISDSPKQTD 137
           SL FF+++ + PK  D
Sbjct: 34  SLEFFDLLPEDPKLYD 49


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 71  ITRQNIVFTGWLVL 30
           +TRQ ++  GW VL
Sbjct: 254 VTRQKLLELGWDVL 267


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 95  QTLTFSWNITRQNIV 51
           Q L F WN+T   +V
Sbjct: 158 QDLVFIWNMTDPLVV 172


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 28 FHFCVCI 8
          F FCVC+
Sbjct: 8  FGFCVCV 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,441
Number of Sequences: 438
Number of extensions: 917
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)