Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i14
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   3.0  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   5.2  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   6.9  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.2  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 749  LHSLRSGQRTQGPPTAVNAQHLAALA 672
            LH  RSG+    P T ++ +HLA LA
Sbjct: 1094 LHESRSGRVYMSPLTEISPEHLARLA 1119


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 123 KIYSKVKNINILNCIHDFDH 182
           KIY  V N N+   +HD +H
Sbjct: 40  KIYENVSNFNVPRKLHDIEH 59


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 611 EKLQECLNRL-GQAVQVSLANGCVYGNVNNLLASLDTLPENRLLR 480
           + L+ C   L  +++++ + N C  G  +  +AS+ +L   RLL+
Sbjct: 92  QALKHCRESLPNKSIEIDMGNQCASGLADVTVASVFSLKNERLLK 136


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 558 SQRLRVWQRQQPPGFPGYTA*ESSPPHSHTNPSAE 454
           S   R W+RQ+ P F  +   E+   H+H   S+E
Sbjct: 424 STHFRYWERQEIPSFAVF---ENKNRHTHEKKSSE 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,823
Number of Sequences: 5004
Number of extensions: 60066
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)