Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i14
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908...    28   7.2  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   7.2  
12_02_0956 + 24776359-24779085                                         28   9.5  

>12_01_0919 -
           9086879-9087064,9087842-9087923,9088357-9089553,
           9089598-9089961,9090086-9090188,9090234-9090479
          Length = 725

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 579 PKSVQTFLKFLIIAQLKTSCEDVMRVRLH-DRRQRGEVLSVNCSRRALGSLAG 734
           P+ ++ F  +L++    T+ + V   + + +RR+ GE+L+ N +R    S  G
Sbjct: 83  PELIRNFHVYLLVGNGATAIKTVAEEKSYVERRREGELLAPNTARAKFSSQCG 135


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
 Frame = +3

Query: 108 FYNILKIYSKVKNINILN----CIHDFDHYVIY 194
           F N L +  ++++ NI++    CIH+ +HY++Y
Sbjct: 271 FENELDLLGRIRHPNIVSLLGFCIHEGNHYIVY 303


>12_02_0956 + 24776359-24779085
          Length = 908

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 718 WVRWPDLKLCKT 753
           W RWP LKLC T
Sbjct: 277 WFRWPTLKLCST 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,726,628
Number of Sequences: 37544
Number of extensions: 374535
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)