Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i14
         (777 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128318-1|BAC87382.1|  421|Homo sapiens protein ( Homo sapiens ...    31   4.6  
U79666-1|AAB64179.1| 2505|Homo sapiens alpha1A-voltage-dependent...    31   6.1  
AF004884-1|AAB61613.1| 2510|Homo sapiens neuronal calcium channe...    31   6.1  

>AK128318-1|BAC87382.1|  421|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46459 fis, clone THYMU3020970. ).
          Length = 421

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 539 HTRSRWLGIPEPLAQVGSDIPEVSHHCS 622
           H RSRW   P P+ +VG ++ E    CS
Sbjct: 185 HRRSRWSPPPVPVVRVGEEVQEPQSSCS 212


>U79666-1|AAB64179.1| 2505|Homo sapiens alpha1A-voltage-dependent
            calcium channel protein.
          Length = 2505

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 579  ASGSGIPSQRLRVWQRQQPPGFPGYTA*ESSPPHSHTNPSAEHL 448
            A GSG P Q+ +  Q+QQ    PG  A  +S P  +  P+AE L
Sbjct: 2307 AGGSGPPQQQQQQQQQQQAVARPGRAA--TSGPRRYPGPTAEPL 2348


>AF004884-1|AAB61613.1| 2510|Homo sapiens neuronal calcium channel
            alpha 1A subunit isoform A-1 protein.
          Length = 2510

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 579  ASGSGIPSQRLRVWQRQQPPGFPGYTA*ESSPPHSHTNPSAEHL 448
            A GSG P Q+ +  Q+QQ    PG  A  +S P  +  P+AE L
Sbjct: 2312 AGGSGPPQQQQQQQQQQQAVARPGRAA--TSGPRRYPGPTAEPL 2353


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,250,415
Number of Sequences: 237096
Number of extensions: 2080671
Number of successful extensions: 4246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4246
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)