Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i13
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    28   1.3  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    27   3.1  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   4.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   9.4  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   9.4  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   9.4  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   9.4  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 204 KDDSRNLGRFYDSGAEDISS--SGSDCSTGTRGEERTDHALR 85
           K+D+ +  +  DSG  D     SG+D S    GEE++  AL+
Sbjct: 786 KEDASSTKQAKDSGTNDFDKLISGNDVSKNNSGEEQSRSALK 827


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 171 DSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTTETKF 31
           D+G+ED+ S  +     T   E++  +LR    ++KR+ D   E K+
Sbjct: 473 DNGSEDLGSIENKTVEDTGNREKSKKSLRKDIREKKRKIDEYVEEKY 519


>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 547 PMSTKVGISFHKGANR-LNGERFSHGN--VNWSSV 642
           PM+TK+G  ++KG      G++  HG   V WS V
Sbjct: 14  PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 656  QPVSITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 558
            +P +ITDD    P  N     L +PL W +I ++
Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = -1

Query: 347 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 222
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 385 KNWLANTSWSSSLASCDPWTKIKS 456
           + W+ N+S S  L  CD   KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = -1

Query: 347 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 222
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +1

Query: 541 LGPMSTKVGISFHKGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAM 720
           L P S  V +  +  A + NG+R   G+V++ S  +   +IT +      +TVA   + +
Sbjct: 254 LKPGSVVVDVGIN--AVQRNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAMLMENI 311

Query: 721 KTAXR--RGENIF--LDIRVFKLR 780
             A +  R ENI+  +D+   +L+
Sbjct: 312 VNAAKIARTENIYRKIDLNPLELK 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,029
Number of Sequences: 5004
Number of extensions: 44503
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)