Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14i10
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 46 6e-06
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 33 0.060
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.18
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 31 0.18
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.32
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 30 0.32
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.42
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 29 0.74
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 28 1.3
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 3.9
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 27 3.9
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 5.2
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 26 6.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.1
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 25 9.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.1
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 25 9.1
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.1
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.1
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 46.0 bits (104), Expect = 6e-06
Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 32/246 (13%)
Frame = -3
Query: 771 DDIKFLESLLAQSSNTTLPPIPPLGKHYSEVWADEHLAE-DQNASNPNKQKSSMSPDASH 595
DDI FL+ SS+ IPPLG+ Y ++ ++ + N+ N Q S+ +
Sbjct: 251 DDIAFLKKGFDVSSSYN---IPPLGERYYDLTPEDEMTNLCANSIYQNLQTSAQG--SLE 305
Query: 594 ARKKLEKSSESMITGPLTQRLVSALMEENVMSYEI--PDIKVKMVSTTKSG--------- 448
A + + SE + GPLT+RL+++L+ + E P I V + T SG
Sbjct: 306 AFNEADTVSEEVRCGPLTERLMASLIPCYTQNDEEQKPSIAVGEFAETDSGSEKSKIGTS 365
Query: 447 -----------------YKNSLTL-EKCLRKELVEQGILDPEDLPPLTNPADDEILAEIK 322
++SL++ E LR L + GIL D+ + DDEI A ++
Sbjct: 366 IDGIESGNNEYTEQPDIQESSLSICEDRLRYTLKQLGILYDGDVD-WSKRQDDEISATLR 424
Query: 321 KCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLKKQLDQVDLECIDIY-KKMVAAK-QKK 148
L V EN + L+ + +EM + +D +D + Y K+ + K +KK
Sbjct: 425 SLNARLKVVSDENEKMRNALLQMLPEEMAFQEFQNVMDDLDKQIEQAYVKRNRSLKVKKK 484
Query: 147 RPVTKK 130
R VT K
Sbjct: 485 RIVTDK 490
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 32.7 bits (71), Expect = 0.060
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = -3
Query: 726 TTLPPIPPLGK-HYSEVWADEHLAEDQNASNPNKQKSSMSPDASHARKKLEKSSESMITG 550
T+ PPIPPL + +S +EH++ +NP+ ++ + P S +++ + S+++
Sbjct: 250 TSTPPIPPLSEPKHSPATVNEHISPPSALTNPSTEE--LKPSTS---LPIDQGNASVVSK 304
Query: 549 PLTQRLVSALMEEN 508
P Q VS ++ +N
Sbjct: 305 PTQQ--VSIVLSQN 316
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 31.1 bits (67), Expect = 0.18
Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Frame = -3
Query: 624 KSSMSPDASHARKKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDIKVKMVSTTKSGY 445
+S + AS+ K SSE+ L + E + + ++P+++ K+ +
Sbjct: 1206 ESLLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKVPELERKITNLMHEYS 1265
Query: 444 KNSLTLEKCLRKELVEQGILDPEDLPPLTNPADDEILAEIKKCQTELTAVRKENCRNLKN 265
+ T E RK L+ D E+L L + + + E+ + Q L V+ R+L++
Sbjct: 1266 QLGKTFEDEKRKALIAS--RDNEELRSLKSELESKRKLEV-EYQKVLEEVK--TTRSLRS 1320
Query: 264 LIGLCKQEMI-RLNLKKQLDQVDLECIDIYKKMVAA 160
+ L + ++ +++ +L +V+++ +D K++ +A
Sbjct: 1321 EVTLLRNKVADHESIRSKLSEVEMKLVDTRKELNSA 1356
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 31.1 bits (67), Expect = 0.18
Identities = 29/115 (25%), Positives = 56/115 (48%)
Frame = -3
Query: 627 QKSSMSPDASHARKKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDIKVKMVSTTKSG 448
+K S+ D A K+ E S S ++ L ++L S +E +S + +++ K +
Sbjct: 924 EKQSIEEDL--ANKQTEISYLSDLSSTLEKKLSSIKKDEQTISSKYKELE-KDYLNIMAD 980
Query: 447 YKNSLTLEKCLRKELVEQGILDPEDLPPLTNPADDEILAEIKKCQTELTAVRKEN 283
Y++S L K + E+ L+ +L DDE+L + + T++ +R+EN
Sbjct: 981 YQHSSQHLSNLEKAINEKN-LNIRELNEKLMRLDDELLLKQRSYDTKVQELREEN 1034
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.32
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = -3
Query: 321 KCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLKKQLDQVDLECIDIYKKMVAAKQKKR- 145
K Q ++ ++KE +L G K E NL+K+LD+ YK +V + +KR
Sbjct: 118 KTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDK--------YKDLVETEAEKRA 169
Query: 144 PVTKKEKEDAWKAINEQIRLNKEI 73
+TK+E E +W EQ +L K++
Sbjct: 170 AITKEECEKSWL---EQQKLYKDM 190
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 30.3 bits (65), Expect = 0.32
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 8/199 (4%)
Frame = -3
Query: 756 LESLLAQSSNTTLPPIPPLGKHYSEVWAD-------EHLAEDQNASNPNKQKSSMSPDAS 598
L+SLL SS TTL +P + + A+ E+ E N S P+K KS+ +
Sbjct: 50 LKSLLPMSSKTTLSMLPQVNIGANSFSAETPVDLKKENETELANISGPHK-KSTSTSTRK 108
Query: 597 HARKKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDIKVKMVSTTKSGYKNSLTLEKC 418
AR +K+++S ++ + + + S ++ V S+++S + ++
Sbjct: 109 RARSSKKKATDS-VSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEEQISKATK 167
Query: 417 LRKELVEQGILDPEDLPPLTNPADDEILAEIKKCQTELTAVRKENCR-NLKNLIGLCKQE 241
K+ E+ ++ D L N + + + Q E ++ R + KNL ++
Sbjct: 168 KVKQKEEEEYVEEVDEKSLKNESSSDEFEPVVPEQLETPISKRRRSRSSAKNL-----EK 222
Query: 240 MIRLNLKKQLDQVDLECID 184
+NL + +C+D
Sbjct: 223 ESTMNLDDHAPREMFDCLD 241
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.9 bits (64), Expect = 0.42
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = -3
Query: 255 LCKQEMIRLNLKKQLDQVDLECIDIYKKMVAAKQKKRPVTKKEKEDAWKAINEQIRLNKE 76
L +QE I K+L++++ E I + ++ ++++R +EKE+A + EQI LNKE
Sbjct: 113 LREQEKIAAKKMKELEKLEKERIRLQEQQ--RRKEERDQKLREKEEAQRLRQEQI-LNKE 169
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.74
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -3
Query: 366 PLTNPADDEILAEIKKCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLKKQLDQ-VDLEC 190
P + +DDE+ + + E + + N + K L K+EM+ NL + DQ VDLE
Sbjct: 256 PRASGSDDELDYDEEFADDEEAPIMEGNEEDNKKLKDKIKKEMLTANLFGEADQDVDLEE 315
Query: 189 IDIYKKMVAAKQKKRPVTKKEKEDAWKAINE 97
+ + K+ +R + EK A+++ E
Sbjct: 316 ENDRQMSREGKKLQRYLKLLEKNLAYESDEE 346
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = -3
Query: 345 DEILAEIKKCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLKKQLDQVDLECIDIYKKMV 166
D+ L+E +KC+TE + + N +GL +++ L + +CID + +
Sbjct: 474 DQWLSEAEKCETEGAVITAQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVF 533
Query: 165 AAKQKKRPVTKK 130
A + P ++K
Sbjct: 534 AFSLRVYPKSEK 545
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/62 (17%), Positives = 29/62 (46%)
Frame = -3
Query: 225 LKKQLDQVDLECIDIYKKMVAAKQKKRPVTKKEKEDAWKAINEQIRLNKEINALPQTGPN 46
L+++++ L + + + + + PVT ++ AW +E + N ++++
Sbjct: 251 LRRRIESARLRSNQLNEPVEQPRVVQTPVTNASEQQAWNDFDEILHANSSVHSVATEATI 310
Query: 45 SN 40
SN
Sbjct: 311 SN 312
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Frame = -3
Query: 717 PPIPPLG-----KHYSEVWADEHLAEDQNASNPNKQKSSMSPDASHARKKLEKSSESM 559
PP+P L K E+W DE+L + P + P + + +++ SM
Sbjct: 390 PPLPSLEVVKTLKRKEEIWVDENLVKKDKLGIPRNFCQTAPPHSRDITENMQRKFSSM 447
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 741 AQSSNTTLPPIPPLGKHYSEVWADEHLAEDQNASNPNKQKSSMSPDASHAR 589
AQS T P GK W D+ E+Q A N + Q SS S +++
Sbjct: 156 AQSKQTNAPK---KGKKQLRKWDDQITEEEQAALNYSSQASSASQTVDNSQ 203
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 387 LDPEDLPPLTNPADDEILAE-IKKCQTELTAVRKEN 283
+D +DL AD+E+L E I+KC EL+ R EN
Sbjct: 1 MDVDDLIYACRAADEELLDEIIEKCPQELSR-RDEN 35
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/70 (20%), Positives = 27/70 (38%)
Frame = -3
Query: 660 AEDQNASNPNKQKSSMSPDASHARKKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDI 481
+ ++S P S S +SH KSS + ++ S+ + S+ + +
Sbjct: 385 SSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSL 444
Query: 480 KVKMVSTTKS 451
K + T S
Sbjct: 445 SSKPILTASS 454
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 9.1
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Frame = -3
Query: 768 DIKFLESLLAQSSNTTLPPIP--PL--GKHYSEVWA---DEHLAEDQNASNPNKQKSSMS 610
+++ + L A+S+ ++P + PL G +SE DE + A + N SS S
Sbjct: 519 ELQMMGVLEAESAKISIPLLQSDPLLKGSVFSEEVQEDYDERQFTGEAAVSANDVLSSSS 578
Query: 609 PD--ASHARKKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDIKVKMVSTTKSGYKNS 436
P +SH ++KSS + G ++S + ++ D+K + + K++
Sbjct: 579 PRHFSSHTPVNVDKSSYLEMNGHSLSTVISGKESISSFGAKVDDLKSTSKESARQFGKSA 638
Query: 435 LT 430
LT
Sbjct: 639 LT 640
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 588 KKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDIKVKMVSTTKSGYK 442
K +K E ++ G L + ++E+ E+P+ +K+V TKS K
Sbjct: 144 KTADKKDEIVVQGDLNYDIFDFILEK---FKEVPEDNIKIVEDTKSKKK 189
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/62 (17%), Positives = 29/62 (46%)
Frame = -3
Query: 609 PDASHARKKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDIKVKMVSTTKSGYKNSLT 430
PDA R++ + +I GP+ + L +++ + E+P +++G+ +
Sbjct: 313 PDADKVRRRRLSEKQKLIYGPMAD-IGGILFDKDRVYIEVPTSNFSKDENSEAGFGERMV 371
Query: 429 LE 424
++
Sbjct: 372 MQ 373
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 243 EMIRLNLKKQLDQVDLECIDIYKKMVAAKQKKRPVTKK 130
+M+ ++L KQ++Q+ C+ +Y K+ A + V K+
Sbjct: 98 KMVFMSLAKQIEQMLKFCMMVYSKLCEAFETTLKVAKE 135
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -3
Query: 249 KQEMIRLNLKKQLDQVDLECIDIYKKMVAAKQKKRP 142
++++I ++++ +Q + EC+DI KMV + K+P
Sbjct: 160 EKDVITISVENGKEQSEEECLDIVHKMV--NENKQP 193
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 186 QYILDPLDPVAFSD 227
QY+L PLDP+A S+
Sbjct: 504 QYVLTPLDPIAASE 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,258
Number of Sequences: 5004
Number of extensions: 54991
Number of successful extensions: 230
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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