Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i09
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   2.3  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   3.1  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   3.1  
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...    24   4.0  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    24   4.0  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    24   4.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   5.3  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   7.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    23   9.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    23   9.3  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    23   9.3  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    23   9.3  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    23   9.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   9.3  

>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 272 DKATYNKSGLSSI*RNCNEQAPEPGRHCSD-GESAPELRRRRQKILAS**REMRRYTHRQ 96
           +K  YN+SGL+   R   E+  E  R   +  E   EL+R +++  A+   ++R  T RQ
Sbjct: 18  EKKAYNRSGLADAQRTPYEKRMEQKRKLDEIKEREKELKREKEEQRAAHAEKIR--TRRQ 75


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 72  RSANSS*VLAVCIASHFTSLTCQYFLSSSTQFRS*FSIAAMSSW 203
           +S + S +    +  HF  L  ++FL  +  F S  +    SSW
Sbjct: 53  KSPDESTLTDTIVVRHFPDLVMEFFLPEAYPFNSPPTFFLKSSW 96


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 280 IYLTKQHITKVVCHQYKEIAMNKPLN---QEDIAAMENQL 170
           +Y T + I K +    K +A+N PLN    + IA M+N L
Sbjct: 368 LYNTSKDIIKFISVIRKGLALNIPLNIRPPQRIAVMDNPL 407


>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +1

Query: 169 GADS--PSLQCLPGSGACSLQ 225
           GAD    +LQC+ G GAC  Q
Sbjct: 95  GADEVDDNLQCIKGGGACLFQ 115


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 133 LASIFCRLLRNSGADSPSLQCLPGSGACSLQFL 231
           ++S+     RN    SP+L  + G G  ++QFL
Sbjct: 304 VSSVLPLTFRNFLGSSPTLDAMVGLGTSAVQFL 336


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 101 GVYSVAFHVINLPVFSVVFYAIPELILHRCNVFLVQGLV 217
           G+++ A  +++L   +  FY IP  IL    +  V  L+
Sbjct: 449 GIFTAAVVILSLYCLTDAFYYIPNAILSAVIIHAVTDLI 487


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 104 VYSVAFHVINLPVFSVVFYAIPEL 175
           +  + F  IN+ VFS+V Y +  L
Sbjct: 621 IVDLPFRFINISVFSIVLYFLTNL 644


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 184 MENQLRNCVEDDRKYWQVNDVKCD 113
           +ENQ +  +  D K W+V  V  D
Sbjct: 239 IENQFKYAIYSDGKAWRVQAVSID 262


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 31  SRISLKASSERQRHDQQIPHRF 96
           S+ S  ASSE ++ + +IPH F
Sbjct: 455 SKSSDSASSEYEKINHRIPHHF 476


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -3

Query: 283 NIYLTKQHITKVVCHQYKEIAMNK 212
           ++ L+  H+ K+  H++  + +NK
Sbjct: 199 DVLLSTDHLGKIAVHEFYNLVINK 222


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 74  ISKFLIGFGGVYSVAFHVIN 133
           + K   G+GG+YS A H I+
Sbjct: 569 VGKQSAGYGGIYSPATHGIS 588


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 50  PQVSGRDTISKFLIGFGGVYSVAFHVINLPVFSVVFYAIPE 172
           P  +   T   F   F G   ++  V N+P  + +  A+PE
Sbjct: 384 PTTNSPLTPQSFTNSFLGYLPISMPVANMPAIAPISVALPE 424


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 247 VCHQYKEIAMNKPLNQEDIAAMENQLRNCV 158
           +C++    +M + L  E+I  ++ +LRN V
Sbjct: 391 LCYRVNYRSMERSLRNEEIDKLQEKLRNRV 420


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 175 DSPSLQCLPGSGACSLQFLYIDDKPL 252
           +S SLQ +P +    L FL +D KP+
Sbjct: 569 ESESLQKIPEAYRTHLFFLLLDTKPV 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,672
Number of Sequences: 5004
Number of extensions: 24392
Number of successful extensions: 66
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)