Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14i09
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747... 28 1.5
04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337 27 2.6
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344... 27 2.6
05_04_0094 + 17888998-17889589,17889668-17889795,17889879-178901... 27 3.5
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 3.5
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 27 3.5
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 26 4.6
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 26 4.6
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 26 4.6
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 25 8.0
01_06_0944 + 33211652-33212427,33212492-33212660,33212825-332129... 25 8.0
01_06_0231 + 27727110-27727206,27727315-27727447,27727491-277275... 25 8.0
>03_06_0775 -
36174098-36174204,36174540-36174594,36174690-36174741,
36174947-36175028,36175110-36175204,36175339-36175727
Length = 259
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 208 LNQEDIAAMENQLR-NCVEDDRKYWQVNDVK 119
LN++D +EN + +C+ DD Y+++ D+K
Sbjct: 87 LNEKDSKRLENLIAPDCIIDDNAYYKLLDIK 117
>04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337
Length = 516
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 212 APEPGRHCSDGESAPELRRRRQKILAS 132
AP P + E AP LRRR ++++A+
Sbjct: 5 APAPAAGAREDEDAPALRRRLRRLVAA 31
>01_01_0467 -
3446243-3446254,3446331-3446420,3446544-3446816,
3446898-3447066,3447579-3447646,3447890-3448074,
3448683-3448806
Length = 306
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 77 SKFLIGFGGVYSVAFHVINLPVF--SVVFYAIPELILHRCNVFLVQGLVHCNFFILMTN 247
++ ++GFG + ++ ++NL + SV FY + +L + C V L F MTN
Sbjct: 73 ARTVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVILETLFFRKKFSYQMTN 131
>05_04_0094 +
17888998-17889589,17889668-17889795,17889879-17890139,
17890241-17890503,17890588-17890909
Length = 521
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -3
Query: 226 IAMNKPLNQEDIAAMENQLRNCVEDDRKYWQVNDVKCDAIHTAKTYEEFADRVSAAHLR 50
+ M K N ++ ME ++ + Q+ + HT TY EF DRV ++ ++
Sbjct: 311 LEMTKNFNPDEADVMEQEVNTLLS------QLRYMPSSLFHTDVTYIEFLDRVHSSEMK 363
>02_03_0180 -
16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 115 DAIHTAKTYEEFADRVSAAHLRPL 44
D I +T+ F RV +HLRP+
Sbjct: 384 DGIKLLETFSRFRTRVDVSHLRPI 407
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = -3
Query: 214 KPLNQEDIAAMENQLRNCVEDDRKYWQVNDVKCDAIHTAKTYEEFADRVSAAHLRPLE 41
+PL+ E ++ N+L+ C +R ++ D VSA + P+E
Sbjct: 788 EPLHDEALSENSNELQQCTTSERSSTMISPAAADNSMITMAATSVESSVSADKVSPVE 845
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 172 LRNCVEDDRKYWQVNDVKCDAIHTAKTYEEFADRVSAA 59
LR C DD ND+ CDAI AK ++ S A
Sbjct: 649 LRGC-RDDPSTTMYNDLHCDAIKCAKEGSASSELYSVA 685
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 154 LLRNSGADSPSLQCLPGSGACSLQFLYIDDKPLL 255
L R S D P++ LP + SLQ +YI D PLL
Sbjct: 1155 LQRISIVDCPNISSLPDLPS-SLQHIYIRDCPLL 1187
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -3
Query: 211 PLNQEDIAAMENQLRNCVEDDRKYWQVNDVKCDAIHTAKTYEEFAD 74
PL QE+I ++ +C E+DR + +++ T++T++ D
Sbjct: 694 PLTQENIDTVKLNTLSCFEEDRSTTRESELAAAIPTTSETHDSDKD 739
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 247 VCHQYKEIAMNKPLNQEDIAAMENQLRNCVEDDRKYWQVNDVKC 116
VC + A + PL+ + ++ + L+ C K Q DV C
Sbjct: 480 VCVPGSQSASDGPLSPQKLSLLRTILQRCPSSTGKLHQQQDVAC 523
>01_06_0944 +
33211652-33212427,33212492-33212660,33212825-33212936,
33213061-33213159,33213237-33213394,33214911-33215062,
33215162-33215249,33215399-33215476,33215516-33215690,
33216701-33217002
Length = 702
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 244 CHQYKEIAMNKPLNQEDIAAMENQ 173
C ++KE +N+P E I+A++N+
Sbjct: 540 CPEHKESPINRPTMTEIISALDNE 563
>01_06_0231 +
27727110-27727206,27727315-27727447,27727491-27727553,
27729069-27729140,27729640-27729783,27729868-27729990,
27730102-27730157,27730249-27730635,27731176-27731366,
27731498-27731630,27731715-27731869,27732188-27732379,
27732490-27732750
Length = 668
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = -3
Query: 229 EIAMNKPLNQEDIAAMENQLRNCVEDDRKYWQVNDVKCDAIHTAKTYEEFADRVSAAHLR 50
EI +P E ++ N C++DDR ++ C T KT++E + ++
Sbjct: 564 EIISGRPPYSEHKGSLANLAMECIKDDR------NISCLLDPTLKTHKENELEIICELIQ 617
Query: 49 PLEKSDYKQK 20
+SD K++
Sbjct: 618 ECIQSDPKKR 627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,150,778
Number of Sequences: 37544
Number of extensions: 157920
Number of successful extensions: 432
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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