Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14i09
(294 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC041060-1|AAH41060.1| 242|Homo sapiens coiled-coil domain cont... 42 5e-04
M19182-1|AAA52584.1| 354|Homo sapiens guanine nucleotide-bindin... 34 0.095
U21943-1|AAA87732.1| 670|Homo sapiens organic anion transportin... 28 4.7
AK127017-1|BAC86787.1| 138|Homo sapiens (HTF1). protein. 28 4.7
AJ400735-1|CAB97006.1| 670|Homo sapiens organic anion transport... 28 4.7
AF279784-1|AAG30037.1| 670|Homo sapiens organic anion transport... 28 4.7
AF085224-1|AAD52694.1| 579|Homo sapiens brain organic anion tra... 28 4.7
AK127220-1|BAC86887.1| 198|Homo sapiens protein ( Homo sapiens ... 27 8.2
AB209093-1|BAD92330.1| 1455|Homo sapiens mitogen-activated prote... 27 8.2
>BC041060-1|AAH41060.1| 242|Homo sapiens coiled-coil domain
containing 103 protein.
Length = 242
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 187 AMENQLRNCVEDDRKYWQVNDVKCDAIHT-AKTYEEFADRVSAAHLRPLEKSD-YKQKIR 14
A+E +L+ + D KY + N K A+ +YEEF V A+HL+PLE+ D K
Sbjct: 11 ALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLERKDKMGGKRT 70
Query: 13 ADWN 2
WN
Sbjct: 71 VPWN 74
>M19182-1|AAA52584.1| 354|Homo sapiens guanine nucleotide-binding
protein protein.
Length = 354
Score = 33.9 bits (74), Expect = 0.095
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = -3
Query: 253 KVVCHQYKEIAMNKPLNQEDIAAM-----ENQLRNCVEDDRKYWQVNDVKCDAIHTAKTY 89
K+VC + +P + E ++AM ++ ++ C R+Y Q+ND +AK Y
Sbjct: 105 KMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREY-QLND-------SAKYY 156
Query: 88 EEFADRVSAAHLRPLEKSDYKQKIR 14
+ DR+ AA +PLE+ + +++
Sbjct: 157 LDSLDRIGAADYQPLEQDILRTRVK 181
>U21943-1|AAA87732.1| 670|Homo sapiens organic anion transporting
polypeptide protein.
Length = 670
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 75 SANSS*VLAVCIASHFTSLTCQYFLSSSTQFRS*FSIAAMSSW 203
S NSS VL +C SL QYFL S +S+AA+ +
Sbjct: 490 SGNSSAVLGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGY 532
>AK127017-1|BAC86787.1| 138|Homo sapiens (HTF1). protein.
Length = 138
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 112 RRISRH*LASIFCRLLRNSGADSPSLQCLPG-SGACSLQFLYIDDKPLL 255
R +S H +FC +LR P L+C G CSL+ L D P L
Sbjct: 46 RHLSGHIHVVLFCFVLRQGLPLLPRLECSGMIIGHCSLELLGSSDSPAL 94
>AJ400735-1|CAB97006.1| 670|Homo sapiens organic anion transporting
polypeptide 1 (OATP1) protein.
Length = 670
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 75 SANSS*VLAVCIASHFTSLTCQYFLSSSTQFRS*FSIAAMSSW 203
S NSS VL +C SL QYFL S +S+AA+ +
Sbjct: 490 SGNSSAVLGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGY 532
>AF279784-1|AAG30037.1| 670|Homo sapiens organic anion transporting
polypeptide protein.
Length = 670
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 75 SANSS*VLAVCIASHFTSLTCQYFLSSSTQFRS*FSIAAMSSW 203
S NSS VL +C SL QYFL S +S+AA+ +
Sbjct: 490 SGNSSAVLGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGY 532
>AF085224-1|AAD52694.1| 579|Homo sapiens brain organic anion
transporter subtype OATP1b protein.
Length = 579
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 75 SANSS*VLAVCIASHFTSLTCQYFLSSSTQFRS*FSIAAMSSW 203
S NSS VL +C SL QYFL S +S+AA+ +
Sbjct: 488 SGNSSAVLGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGY 530
>AK127220-1|BAC86887.1| 198|Homo sapiens protein ( Homo sapiens
cDNA FLJ45287 fis, clone BRHIP3002124. ).
Length = 198
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 119 FHVINLPVFSVVFYAIPELILHRCNVFLVQGLVHCNFFIL 238
FHV++L +F+ F+ + + V L HCN +L
Sbjct: 87 FHVLHLSLFTFFFFGTESPSVAQAGVQWCMILTHCNLHLL 126
>AB209093-1|BAD92330.1| 1455|Homo sapiens mitogen-activated protein
kinase kinase kinase 5 variant protein.
Length = 1455
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 209 PEPGRHCSDGESAPELRRRR 150
P PG GE APE RRRR
Sbjct: 18 PPPGSGVPSGERAPERRRRR 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,880,170
Number of Sequences: 237096
Number of extensions: 847556
Number of successful extensions: 5954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5954
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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