Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14i09
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 28 1.3
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 28 1.3
Z70311-10|CAA94377.3| 602|Caenorhabditis elegans Hypothetical p... 27 1.8
U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical pr... 27 3.1
U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical pr... 27 3.1
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 26 5.4
AL022274-1|CAA18357.1| 349|Caenorhabditis elegans Hypothetical ... 26 5.4
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 26 5.4
Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z66516-3|CAA91356.1| 79|Caenorhabditis elegans Hypothetical pr... 25 7.1
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p... 25 7.1
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr... 25 9.4
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 25 9.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 25 9.4
AL032632-11|CAJ80824.1| 462|Caenorhabditis elegans Hypothetical... 25 9.4
AL032632-10|CAA21581.1| 475|Caenorhabditis elegans Hypothetical... 25 9.4
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 25 9.4
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 89 IGFGGVYS-VAFHVINLPVFSVVFYAIPELILHRCNVFLVQGLVHC-NFFILMTNHFC 256
IG+G + + + V++VV + +ILH+ + GL H +F + +T+ FC
Sbjct: 416 IGYGNITAKTKLGKLAAMVYAVVGIPLVLMILHKSGRLFLMGLEHMWDFILRITDSFC 473
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 89 IGFGGVYS-VAFHVINLPVFSVVFYAIPELILHRCNVFLVQGLVHC-NFFILMTNHFC 256
IG+G + + + V++VV + +ILH+ + GL H +F + +T+ FC
Sbjct: 416 IGYGNITAKTKLGKLAAMVYAVVGIPLVLMILHKSGRLFLMGLEHMWDFILRITDSFC 473
>Z70311-10|CAA94377.3| 602|Caenorhabditis elegans Hypothetical
protein T25B9.6 protein.
Length = 602
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 211 PLNQEDIAAMENQLRNCVEDDRKYWQVNDVKCDAI 107
PLNQ + A +++ +RN +E+D K+ N KC+ I
Sbjct: 298 PLNQNERADIDHVIRN-IEEDSKF--ENKYKCELI 329
>U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical
protein C49H3.6b protein.
Length = 498
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Frame = -3
Query: 268 KQHITKVVCHQ--YKEIAMNKPLN--QEDIAAMENQLRNCVEDDRKYWQVNDVKCDAIHT 101
K+ TK++ + Y ++ MN P + D A Q+ D+ K Q+ + + D +
Sbjct: 71 KRERTKILLSEAKYGKLNMNDPFAALRRDSAITGEQI-----DEEKIVQMYESQVDQLDK 125
Query: 100 AKTYEEFADRVSAAHLRPLEKSDYK--QKIRAD 8
++ + R +A L LEK YK +K+ AD
Sbjct: 126 MMAVQKQSQRNAAVLLVALEKKQYKLVKKLEAD 158
>U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical
protein C49H3.6a protein.
Length = 552
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Frame = -3
Query: 268 KQHITKVVCHQ--YKEIAMNKPLN--QEDIAAMENQLRNCVEDDRKYWQVNDVKCDAIHT 101
K+ TK++ + Y ++ MN P + D A Q+ D+ K Q+ + + D +
Sbjct: 71 KRERTKILLSEAKYGKLNMNDPFAALRRDSAITGEQI-----DEEKIVQMYESQVDQLDK 125
Query: 100 AKTYEEFADRVSAAHLRPLEKSDYK--QKIRAD 8
++ + R +A L LEK YK +K+ AD
Sbjct: 126 MMAVQKQSQRNAAVLLVALEKKQYKLVKKLEAD 158
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 184 MENQLRNCVEDDRKYWQVNDVKCDAIHTAKTYEE 83
+E +L CV + +KY VN D TA + +E
Sbjct: 969 LEKKLLECVNELKKYENVNKKALDQYMTASSQKE 1002
>AL022274-1|CAA18357.1| 349|Caenorhabditis elegans Hypothetical
protein H24D24.1 protein.
Length = 349
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 80 KFLIGFGGVYSVAFHVINLPVFSVVFYAIPELILHRCNVFLVQGLVHCNFFILMT 244
KF+I GV+ FH+I L S+ Y I N+FL+ G+ C+F L++
Sbjct: 33 KFVIAVIGVFVNIFHLIVLTRKSLRVYTI--------NIFLI-GIAICDFIRLLS 78
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 133 VNDVKCDAIHTAKTYEEFADRVS 65
VNDV+ D +HT + E D VS
Sbjct: 641 VNDVERDFVHTLDVFPECCDAVS 663
>Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical
protein T22G5.5 protein.
Length = 512
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 77 SKFLIGFGGVYSVAFHVINLPVFSVV 154
+K LI G+YS+ ++NLP F V
Sbjct: 274 NKVLIIIEGIYSMEGTIVNLPAFIAV 299
>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
protein W08D2.5 protein.
Length = 1256
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 98 GGVYSVAFHV-INLPVFSVVFYAIPELILHRCNV 196
G + + ++H+ I+ P F+V+ + PEL+ C+V
Sbjct: 816 GHLIASSYHLAISGPTFAVIVHEYPELVDQLCSV 849
>Z66516-3|CAA91356.1| 79|Caenorhabditis elegans Hypothetical
protein W03C9.5 protein.
Length = 79
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +1
Query: 1 GSSPLESFVCSRISLKASSERQRH---DQQIPHRFW 99
G+ PLE+ +C L S RH + Q P R W
Sbjct: 31 GTGPLEAAICRHNPLHVVSAALRHQHEESQCPDRKW 66
>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
protein F26G1.1 protein.
Length = 1021
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 100 AKTYEEFADRVSAAHLRPLEKSDYKQKIRADW 5
A+ +E D V A PLE ++ K KI A W
Sbjct: 93 ARKFETDPDLVIPAVQHPLEDAETKNKIAAFW 124
>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
protein C04H5.3 protein.
Length = 1034
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 223 QFLYIDDKPLLLYVALSNKCC 285
Q +YID+K L YVAL C
Sbjct: 311 QRIYIDEKDLFNYVALYESFC 331
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 184 SLQCLPGSGACSLQFLYIDDKPLLLYVALSNKCC 285
S+QC+ G+GA + ++ + + +SN CC
Sbjct: 102 SVQCISGTGAICVGAEFLAQVLSMKTIYVSNPCC 135
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 170 ELILHRCNVFLVQGLVH 220
E + H C+VFL +G+VH
Sbjct: 4796 EKLKHPCSVFLKEGVVH 4812
>AL032632-11|CAJ80824.1| 462|Caenorhabditis elegans Hypothetical
protein Y11D7A.3b protein.
Length = 462
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 DTISKFLIGFGGVYSVAFHVINLPVFSVVFYAIPELILHRCNVFLVQGL--VHCNFFILM 241
DTIS + G Y AFH+ VFS++ ++ + + + L L V+ F +
Sbjct: 55 DTIS----AYAGYYGAAFHLSAFAVFSLITPSLQHFVPSKWFLTLASALFAVYYLGFFQL 110
Query: 242 TNHFCYM 262
++ Y+
Sbjct: 111 NKYYFYL 117
>AL032632-10|CAA21581.1| 475|Caenorhabditis elegans Hypothetical
protein Y11D7A.3a protein.
Length = 475
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 DTISKFLIGFGGVYSVAFHVINLPVFSVVFYAIPELILHRCNVFLVQGL--VHCNFFILM 241
DTIS + G Y AFH+ VFS++ ++ + + + L L V+ F +
Sbjct: 68 DTIS----AYAGYYGAAFHLSAFAVFSLITPSLQHFVPSKWFLTLASALFAVYYLGFFQL 123
Query: 242 TNHFCYM 262
++ Y+
Sbjct: 124 NKYYFYL 130
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 182 HRCNVFLVQGLVHCNFFILMTNHFC 256
HRCN + Q C FF + FC
Sbjct: 74 HRCNELMGQDYKPCKFFQNVYKDFC 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,224,831
Number of Sequences: 27780
Number of extensions: 144857
Number of successful extensions: 541
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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