Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i09
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    27   0.063
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   2.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   2.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   2.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    20   7.3  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 0.063
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 226 IAMNKPLNQEDIAAMENQLRNCVEDDRKYWQVN 128
           +  NKP+  E +  + N+++  V DD  +  VN
Sbjct: 365 VGSNKPVKDEYMLVLSNRMQKIVNDDFNFDDVN 397


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 173 LILHRCNVFLVQGLVHCNFFILMTNHF 253
           L+ +   V  V+   +CN F L  +HF
Sbjct: 525 LLTNARRVASVRAETYCNLFSLSVDHF 551


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 220 MNKPLNQEDIAAMENQLRNCVEDDRKYWQVN 128
           MN+    E + A+ N+++  V +D  + +VN
Sbjct: 370 MNRIHKNEYMLALSNRMQKIVNNDFNFDEVN 400


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 173 LILHRCNVFLVQGLVHCNFFILMTNHF 253
           L+ +   V  V+   +CN F L  +HF
Sbjct: 493 LLTNARRVASVRAETYCNLFSLSVDHF 519


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 157 LRNSGADSPSLQCLPGSGACSLQFLYIDDKPLLLYVALSNK 279
           L N+   + +  CLP  G   +   + D  PLL  V    +
Sbjct: 32  LMNTMTHTTNAFCLPFCGPNVINPFFCDMSPLLSLVCADTR 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,458
Number of Sequences: 438
Number of extensions: 1669
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)