Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14i08
(478 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 104 3e-23
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 33 0.14
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 33 0.14
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.19
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 27 7.0
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 27 9.2
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 27 9.2
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 27 9.2
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 27 9.2
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 27 9.2
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 104 bits (250), Expect = 3e-23
Identities = 55/131 (41%), Positives = 78/131 (59%)
Frame = -2
Query: 432 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 253
M F R V+ GRV +A G +GKL ++V+VID R +DGP S V R L L LTKF
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 252 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 73
LK T+ V+ A+ AK+ E + ++QWA+K+A + RA++TD++R+KL A+ RN
Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120
Query: 72 RARTAVFKSLK 40
R LK
Sbjct: 121 RIVRVELAKLK 131
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 32.7 bits (71), Expect = 0.14
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -2
Query: 258 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 85
+FR+ K A A + +KA T EK + AQK A EK+A+ T + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163
Query: 84 VKRNRARTAVFKSLKVKAARA 22
VK+ ++ + K K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 32.7 bits (71), Expect = 0.14
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -2
Query: 258 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 85
+FR+ K A A + +KA T EK + AQK A EK+A+ T + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163
Query: 84 VKRNRARTAVFKSLKVKAARA 22
VK+ ++ + K K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 171 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 25
E+QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 186 NEKWTESQWAQKLANKEKRAQMTDYDRFK 100
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -1
Query: 202 DRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRIQELEGEGCAC 23
D C + K + +++ Q+E TN L+ V T + C DCR E + AC
Sbjct: 95 DACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRRAEAKDFWRAC 154
Query: 22 WYLRQ 8
+RQ
Sbjct: 155 VQVRQ 159
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GPSTSARV---WSITSTTLTNFPFKGPSATRATRPGS 412
GPSTS+ V S+ +TT PF P++ + PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 294 RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 121
R+++ ++ +T+ + ++A T R L A++N+ W E NKE++ +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459
Query: 120 TD 115
T+
Sbjct: 460 TE 461
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 294 RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 121
R+++ ++ +T+ + ++A T R L A++N+ W E NKE++ +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459
Query: 120 TD 115
T+
Sbjct: 460 TE 461
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 294 RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 121
R+++ ++ +T+ + ++A T R L A++N+ W E NKE++ +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459
Query: 120 TD 115
T+
Sbjct: 460 TE 461
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 7 LAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 108
LA TS RS HL + + +PGT L S + L P
Sbjct: 749 LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/88 (20%), Positives = 37/88 (42%)
Frame = +2
Query: 167 LSVHFSLSLASVHAFLTRRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSIT 346
L H +L+ V A + G V Y + + + +++ +CC GP+ A ++++
Sbjct: 333 LQAHLNLAYDKV-AEMRAEAGKVKNYTIQAMI-YRYYRYLCCAALQYFGPAVLALLFALL 390
Query: 347 STTLTNFPFKGPSATRATRPGSTYRAKG 430
T N + G ++ +T G
Sbjct: 391 LKTTGNLSWIGAPTPQSNTELNTLALSG 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,860,507
Number of Sequences: 27780
Number of extensions: 224950
Number of successful extensions: 650
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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