Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i07
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   6.7  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 225 SVVINFSDIIRVEDWLYLVPILICLNMLY 139
           S+ INFSD  R+ED L  +  ++ + M+Y
Sbjct: 738 SLNINFSDFFRIEDLLVSLSKILSVLMVY 766


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 143 SIFKQIKIGTRYSQSSTLMMSEKFITTLARSES 241
           S FK+ K   RYS+SSTL++ E  I  LA S S
Sbjct: 369 SPFKKPK--RRYSKSSTLVLPETNIRKLANSYS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,901
Number of Sequences: 5004
Number of extensions: 47621
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)