Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i07
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical p...    30   2.1  
AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    28   8.3  

>Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 198 IRVEDWLYLVPILICLNMLYDQF*RTKLAIIWL 100
           +R+ DW+Y+ P+ + LN  YD F   +  ++W+
Sbjct: 324 LRLWDWIYVGPLALMLNQYYD-FVFDEYVLLWI 355


>Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 198 IRVEDWLYLVPILICLNMLYDQF*RTKLAIIWL 100
           +R+ DW+Y+ P+ + LN  YD F   +  ++W+
Sbjct: 324 LRLWDWIYVGPLALMLNQYYD-FVFDEYVLLWI 355


>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 10  LTINSKSVKFFCSTIFFFSIVSYGKIQSY*EPNYS--*LCSLKLIIEHIQTD*NRD*I*P 183
           L ++S S+      +FF +IV   K Q     N+S   + SL  + + +  D + + +  
Sbjct: 294 LRLSSTSIGLLVVALFFINIVVINKDQILDHVNFSGKDISSLDNVTDDMTLD-DAERLNH 352

Query: 184 VFNSDDVRKVYNNTCK 231
            +N +D + +Y +TCK
Sbjct: 353 RWNVNDYKNLYTSTCK 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,380
Number of Sequences: 27780
Number of extensions: 256036
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)