Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i05
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.52 
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    29   0.69 
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    26   4.8  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   8.5  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 377 ILLHLHVFVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYVL*VD--SIMMFYI 529
           +LL  H++   +  N  ++ VLS++  +  + L++VEQ  L +   S++MF++
Sbjct: 58  VLLFTHIY-DCYKTNESVWNVLSIITYFLALFLHVVEQPTLRIPMASLLMFWL 109


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 23/111 (20%), Positives = 50/111 (45%)
 Frame = +2

Query: 188 VTTRVFISTLYVLVQ*YINNILKIPLINAIIKV*FVYNNY*LTTALFRKVSCLIDIGHNI 367
           V++++  + L  ++     NI+  PL+    ++ F      L   ++ + S +      +
Sbjct: 93  VSSQIVFAILVTILNKQALNIINAPLLMLSFQMAFTS----LMVKMYWRFSSVHFQTLRL 148

Query: 368 NQFILLHLHVFVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYVL*VDSIMM 520
              I L   +FVKI    S  +C+  V VS+Y I   L+  + + +  +++
Sbjct: 149 ASAIQLKKFIFVKILGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLL 199


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 696 CCHLWIKQHIXDXYNILKYVQLNQKQKQLGKWLSWLELCVFMY 568
           CCH  I QH    +  +    + +K+K    +  +L+ C   Y
Sbjct: 69  CCHYKIIQHFRSRFREIHPRHVVEKKKTKKVFFKFLKTCAIFY 111


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 696 CCHLWIKQHIXDXYNILKYVQLNQKQ 619
           C HL   + +    N+ +Y+  NQKQ
Sbjct: 351 CIHLQSSEELARHNNVFRYIHHNQKQ 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,285
Number of Sequences: 5004
Number of extensions: 42183
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)