Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i05
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical ...    31   0.85 
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z70279-6|CAA94244.2|  720|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily ass...    28   7.9  
U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily ass...    28   7.9  
AL023841-4|CAC42359.1|  720|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical
           protein T22B2.5 protein.
          Length = 263

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 247 VINILLY*DVXXXXXXXSCNIRLHFIRE-YYTXSFIILLIFNYLCQ 113
           ++NIL+Y  V        C I L   RE Y+   F I ++F +LCQ
Sbjct: 101 LLNILIYSVVTSIGGLGVCEINLRSKREKYFRVIFWIFIVFIHLCQ 146


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +2

Query: 290 FVYNNY*LTT---ALFRKVSCLIDIGHNINQFILLHLHVFVKIFNFNSMLFCVLSVVVSY 460
           ++Y N   TT    L R V+  ID+ H ++ +I   + V   I NF    +C+   + +Y
Sbjct: 16  YIYENCTNTTNQCGLIRNVASSIDVFHWLDVYISTTIFVISGILNF----YCLFIALYTY 71

Query: 461 YLIILNLVEQYVL*VDSIMMFYILNLCLL 547
           Y +     + YV  +   +   ++ + LL
Sbjct: 72  YFLDNETRKHYVFVLSRFLSSILVIISLL 100


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
 Frame = +2

Query: 236 YINNILKIPLINAIIKV*FVYNNY*LTTALFRKVSCLIDI---GHNINQFILLHLHVFVK 406
           ++ NI+K  L++    + F                C + I    +N + FI         
Sbjct: 285 FLKNIIKFFLLSVFCLILFSMQTLFFPNQNHEFFLCRVGIFRTSYNYSCFIDFLRSQLPS 344

Query: 407 IFNFNSMLFCVLSVVVSYYLIILNLVEQYV 496
           IF+F S+ FC++ + +  Y    N VE  +
Sbjct: 345 IFDFLSIFFCIIRIFLEVYHTNKNYVESVI 374


>Z70279-6|CAA94244.2|  720|Caenorhabditis elegans Hypothetical
           protein K11E8.1c protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 6   LFEYCGLGTESSVSLFNDTFMVYHPYTYYNKSXIEY 113
           LFE C   + S + L ++T  +YHPY  +      Y
Sbjct: 391 LFEVCPHTSRSHILLRDNTKNIYHPYHCFTNKMSNY 426


>U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform a protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +2

Query: 398 FVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYV----L*VDSIMMFYILNL 538
           F ++     +++C+L  ++++  ++ NL+  Y+    L V SI  ++ILNL
Sbjct: 38  FYELTPVELIIWCMLYAIIAFMAVVGNLLVLYITLFRLRVRSITTYFILNL 88


>U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform b protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +2

Query: 398 FVKIFNFNSMLFCVLSVVVSYYLIILNLVEQYV----L*VDSIMMFYILNL 538
           F ++     +++C+L  ++++  ++ NL+  Y+    L V SI  ++ILNL
Sbjct: 38  FYELTPVELIIWCMLYAIIAFMAVVGNLLVLYITLFRLRVRSITTYFILNL 88


>AL023841-4|CAC42359.1|  720|Caenorhabditis elegans Hypothetical
           protein K11E8.1c protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 6   LFEYCGLGTESSVSLFNDTFMVYHPYTYYNKSXIEY 113
           LFE C   + S + L ++T  +YHPY  +      Y
Sbjct: 391 LFEVCPHTSRSHILLRDNTKNIYHPYHCFTNKMSNY 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,057
Number of Sequences: 27780
Number of extensions: 226445
Number of successful extensions: 394
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)