Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i04
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    27   3.1  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    27   3.1  
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.1  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    25   9.4  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    25   9.4  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 553 ELYTLSGLNTFSRHSVLIVFFCCLDSLKGYLKYQEVSL 440
           + +T  G   FS+ S ++ F C + + +G ++ +EV L
Sbjct: 4   DTFTNRGSTFFSKLSTVLFFLCAVITFQGVIQRREVEL 41


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 130 FFLHHKSLNLSCLVQLLTYPLSHH 59
           +FLHH+ +  + L  L T+ L HH
Sbjct: 287 YFLHHRRMPNAYLTDLKTWHLDHH 310


>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 144

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 438 HKLTSWYFK*PFRLSRQQKKTIKTECLLNVLRPESVY 548
           HK+ +W F           +    + LLNVLR E VY
Sbjct: 72  HKMQAWRFPNEIEAFNDDGEEYSGQKLLNVLRKEDVY 108


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 271 KCIHISFILKQIEVTASTQHKSRSFIDHYK 182
           K + IS++L +   T  T+H  +S+ID+++
Sbjct: 10  KLLTISYLLYRFPNTNQTKHCFQSYIDYFR 39


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 699 YYNTKIYFI*RIFLEVDLKTK*YNK 625
           +YN++ + + R+ L V +KTK YN+
Sbjct: 178 FYNSRSFVLMRMRLRVAMKTKLYNE 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,747
Number of Sequences: 5004
Number of extensions: 58382
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)