Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i04
         (795 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69301-1|CAA49159.1|  976|Homo sapiens mast/stem cell growth  fa...    30   8.4  
X06182-1|CAA29548.1|  976|Homo sapiens protein ( Human c-kit pro...    30   8.4  
U63834-2|AAC50969.1|  972|Homo sapiens KIT protein protein.            30   8.4  
U63834-1|AAC50968.1|  976|Homo sapiens KIT protein protein.            30   8.4  
BC071593-1|AAH71593.1|  976|Homo sapiens KIT protein protein.          30   8.4  
AJ438313-1|CAD27356.1|  160|Homo sapiens KIT protein protein.          30   8.4  

>X69301-1|CAA49159.1|  976|Homo sapiens mast/stem cell growth
           factor receptor protein.
          Length = 976

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 550 LYTLSGLNTFSRHSVLIVFFCCLDSLKGYLKYQEVSLWGSSWKDLATIALLKAVLH 383
           +  L G  T    +++I  +CC   L  +L+ +  S   S  +D A  AL K +LH
Sbjct: 653 IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLH 708


>X06182-1|CAA29548.1|  976|Homo sapiens protein ( Human c-kit
           proto-oncogene mRNA. ).
          Length = 976

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 550 LYTLSGLNTFSRHSVLIVFFCCLDSLKGYLKYQEVSLWGSSWKDLATIALLKAVLH 383
           +  L G  T    +++I  +CC   L  +L+ +  S   S  +D A  AL K +LH
Sbjct: 653 IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLH 708


>U63834-2|AAC50969.1|  972|Homo sapiens KIT protein protein.
          Length = 972

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 550 LYTLSGLNTFSRHSVLIVFFCCLDSLKGYLKYQEVSLWGSSWKDLATIALLKAVLH 383
           +  L G  T    +++I  +CC   L  +L+ +  S   S  +D A  AL K +LH
Sbjct: 649 IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLH 704


>U63834-1|AAC50968.1|  976|Homo sapiens KIT protein protein.
          Length = 976

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 550 LYTLSGLNTFSRHSVLIVFFCCLDSLKGYLKYQEVSLWGSSWKDLATIALLKAVLH 383
           +  L G  T    +++I  +CC   L  +L+ +  S   S  +D A  AL K +LH
Sbjct: 653 IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLH 708


>BC071593-1|AAH71593.1|  976|Homo sapiens KIT protein protein.
          Length = 976

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 550 LYTLSGLNTFSRHSVLIVFFCCLDSLKGYLKYQEVSLWGSSWKDLATIALLKAVLH 383
           +  L G  T    +++I  +CC   L  +L+ +  S   S  +D A  AL K +LH
Sbjct: 653 IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLH 708


>AJ438313-1|CAD27356.1|  160|Homo sapiens KIT protein protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 550 LYTLSGLNTFSRHSVLIVFFCCLDSLKGYLKYQEVSLWGSSWKDLATIALLKAVLH 383
           +  L G  T    +++I  +CC   L  +L+ +  S   S  +D A  AL K +LH
Sbjct: 81  IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLH 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,623,444
Number of Sequences: 237096
Number of extensions: 1878986
Number of successful extensions: 2323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2323
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)