Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i04
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    30   2.2  
M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein ( C.ele...    30   2.2  
Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 235 EVTASTQHKSRSFIDHYKGDSAHSLKMF*I*SIKLFFL----HHKSLNLSCLVQLLTYPL 68
           + T S +H  R F  HY+ +  ++ KMF    +K   L    HH S++   L+ LL YP 
Sbjct: 212 QYTISVRHDGRVF--HYRINVDNTEKMFITQEVKFRTLGELVHHHSVHADGLICLLMYPA 269

Query: 67  S 65
           S
Sbjct: 270 S 270


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 235 EVTASTQHKSRSFIDHYKGDSAHSLKMF*I*SIKLFFL----HHKSLNLSCLVQLLTYPL 68
           + T S +H  R F  HY+ +  ++ KMF    +K   L    HH S++   L+ LL YP 
Sbjct: 217 QYTISVRHDGRVF--HYRINVDNTEKMFITQEVKFRTLGELVHHHSVHADGLICLLMYPA 274

Query: 67  S 65
           S
Sbjct: 275 S 275


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 235 EVTASTQHKSRSFIDHYKGDSAHSLKMF*I*SIKLFFL----HHKSLNLSCLVQLLTYPL 68
           + T S +H  R F  HY+ +  ++ KMF    +K   L    HH S++   L+ LL YP 
Sbjct: 227 QYTISVRHDGRVF--HYRINVDNTEKMFITQEVKFRTLGELVHHHSVHADGLICLLMYPA 284

Query: 67  S 65
           S
Sbjct: 285 S 285


>M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein (
           C.elegans DNA homologousto the v-abl oncogene. ).
          Length = 552

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 235 EVTASTQHKSRSFIDHYKGDSAHSLKMF*I*SIKLFFL----HHKSLNLSCLVQLLTYPL 68
           + T S +H  R F  HY+ +  ++ KMF    +K   L    HH S++   L+ LL YP 
Sbjct: 78  QYTISVRHDGRVF--HYRINVDNTEKMFITQEVKFRTLGELVHHHSVHADGLICLLMYPA 135

Query: 67  S 65
           S
Sbjct: 136 S 136


>Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical
           protein F14F8.6 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -3

Query: 679 LYIAYFFGSRLKNKII*QIPNQTYL*LLRS-GIQWSLSIHVRNELYTLSGLNTFSRHSVL 503
           +YI Y F S     +   +    ++ + R+  I++ L+  +++ + + SGL T    ++L
Sbjct: 121 MYIIYVFHSLETVSMNLSVWFAVFMTIFRALAIRYPLNKRIKSLITSESGLCTVITITIL 180

Query: 502 IVFFCCL 482
           I+ FCCL
Sbjct: 181 ILPFCCL 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,758
Number of Sequences: 27780
Number of extensions: 319231
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)