Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14i01
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   133   1e-32
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   132   3e-32
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    31   0.082
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   1.0  
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   1.3  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   4.1  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   4.1  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   4.1  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   4.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   4.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   9.5  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   9.5  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   9.5  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  133 bits (322), Expect = 1e-32
 Identities = 59/123 (47%), Positives = 85/123 (69%), Gaps = 2/123 (1%)
 Frame = -3

Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
           M KI+KPGKV L+  GR+AG+K ++++  D+G+   P+GHA VAG++RYP KV K MG  
Sbjct: 1   MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60

Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFED 46
           +I +RS++KPF+KVVNYNHLMPTRY ++    K   +A   K+P +R   R   +  FE+
Sbjct: 61  RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120

Query: 45  EVQ 37
           + Q
Sbjct: 121 KYQ 123



 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -1

Query: 71  STREYVLKT---RYKSGKNKWFFQKL 3
           + R+ V KT   +Y+SGK+ WFF  L
Sbjct: 109 AARKTVKKTFEEKYQSGKSAWFFTPL 134


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  132 bits (319), Expect = 3e-32
 Identities = 58/123 (47%), Positives = 85/123 (69%), Gaps = 2/123 (1%)
 Frame = -3

Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
           M KI+KPGKV LV  GR+AG+K ++++N D+G+   P+GHA VAG++RYP KV K MG  
Sbjct: 1   MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60

Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFED 46
           +I KRS++KPF+KV+NYNHLMPTRY ++    K   +     +P++R   +   +  FE+
Sbjct: 61  RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120

Query: 45  EVQ 37
           + Q
Sbjct: 121 KYQ 123


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 31.5 bits (68), Expect = 0.082
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -3

Query: 408 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 307
           P+K+   + PG V ++L+GR+ G++ +V+   ++
Sbjct: 45  PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 228 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 94
           G + I  R K  P  K+VNYNH   +    +  +F K    D+ DP
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 393 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 310
           + ++ G+VVLV  G Y G+ A++V   D
Sbjct: 6   RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 293 LSEVPSS*FLTTIALRPAYRPLKTSTTLPG 382
           L E+P + F  T+    AY P   S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 199  LGPLVDFILSHPLVHFPGVPVDTSDESMPVRLVGGTFV 312
            LGP+ +    + L HFP    DT + S P    GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 149 VIQLTSALKNSAQKT*KTLQNVRSCVSTREYVLKTRYKSGKNK 21
           V Q  SAL +  +K    L+N+++ +   E  ++ R++  +NK
Sbjct: 89  VAQTLSALVSFPEKLLNILRNMKTILINTEETVRNRFEESQNK 131


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 97  VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 198
           V+QVFC  F  A+   I   +Q++ V NL E  Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 146 IQLTSALKNSAQKT*KTLQNVRSCVSTREYVLKTRYKSGKNKWFF 12
           + + +A KN  +   +TL +  S V T +    TR KS +NKW F
Sbjct: 415 VLVPTAEKNKLEM--RTLADAASAVDTSQ---STRKKSRRNKWHF 454


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 141 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEDEV 40
           VD++ E+F      DP+     + NT ++ ED +
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDRI 854


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 246 KVHKRMGKNKIHKRSKIKPFVKVV 175
           K+ KR+G   I   SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 198 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 61
           + PF K   Y H + T  +   S  KF   +     K K  R +TR
Sbjct: 39  VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 141 LYNVLASSDYSLQPSRKALSWTSCGFY 221
           LY  L+ S   + P R    W SC FY
Sbjct: 246 LYRGLSVSMLKVAPGRYECLWLSCHFY 272


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = -3

Query: 129 FEKFSAKDLKDPAKRKKLR----FNTRVRFEDEVQKWE 28
           F K  A    DPA RKKLR       R+RF++ +   E
Sbjct: 96  FRKALALAPSDPAARKKLRECEQLVKRIRFQEAIHNTE 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,743
Number of Sequences: 5004
Number of extensions: 47851
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)