Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14i01
(539 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L19527-1|AAA19815.1| 136|Homo sapiens ribosomal protein L27 pro... 170 3e-42
L05094-1|AAC15857.1| 136|Homo sapiens ribosomal protein L27 pro... 170 3e-42
BC098560-1|AAH98560.1| 136|Homo sapiens ribosomal protein L27 p... 170 3e-42
BC010026-1|AAH10026.1| 136|Homo sapiens ribosomal protein L27 p... 170 3e-42
BC007273-1|AAH07273.1| 136|Homo sapiens ribosomal protein L27 p... 170 3e-42
BC002588-1|AAH02588.1| 136|Homo sapiens ribosomal protein L27 p... 170 3e-42
BC001700-1|AAH01700.1| 136|Homo sapiens ribosomal protein L27 p... 170 3e-42
AB061851-1|BAB79492.1| 136|Homo sapiens ribosomal protein L27 p... 170 3e-42
BC021886-1|AAH21886.1| 140|Homo sapiens RPL27 protein protein. 149 6e-36
U25752-1|AAA93226.1| 40|Homo sapiens ribosomal protein L27 pro... 35 0.16
BX537845-1|CAD97854.1| 1156|Homo sapiens hypothetical protein pr... 30 4.5
BC043404-1|AAH43404.1| 1143|Homo sapiens non-SMC condensin II co... 30 4.5
BC020560-1|AAH20560.1| 935|Homo sapiens NCAPG2 protein protein. 30 4.5
AK023347-1|BAB14534.1| 698|Homo sapiens protein ( Homo sapiens ... 30 4.5
AK022744-1|BAB14219.1| 774|Homo sapiens protein ( Homo sapiens ... 30 4.5
AK000318-1|BAA91081.1| 888|Homo sapiens protein ( Homo sapiens ... 30 4.5
AB065857-1|BAC06075.1| 315|Homo sapiens seven transmembrane hel... 29 7.9
>L19527-1|AAA19815.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 170 bits (413), Expect = 3e-42
Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Frame = -3
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>L05094-1|AAC15857.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 170 bits (413), Expect = 3e-42
Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Frame = -3
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC098560-1|AAH98560.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 170 bits (413), Expect = 3e-42
Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Frame = -3
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC010026-1|AAH10026.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 170 bits (413), Expect = 3e-42
Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Frame = -3
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC007273-1|AAH07273.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 170 bits (413), Expect = 3e-42
Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Frame = -3
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC002588-1|AAH02588.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 170 bits (413), Expect = 3e-42
Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Frame = -3
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC001700-1|AAH01700.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 170 bits (413), Expect = 3e-42
Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Frame = -3
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>AB061851-1|BAB79492.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 170 bits (413), Expect = 3e-42
Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Frame = -3
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC021886-1|AAH21886.1| 140|Homo sapiens RPL27 protein protein.
Length = 140
Score = 149 bits (361), Expect = 6e-36
Identities = 71/109 (65%), Positives = 86/109 (78%), Gaps = 2/109 (1%)
Frame = -3
Query: 366 LVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPF 187
LVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK KI KRSKIK F
Sbjct: 16 LVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSF 75
Query: 186 VKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFED 46
VKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FE+
Sbjct: 76 VKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 124
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 125 RYKTGKNKWFFQKL 138
>U25752-1|AAA93226.1| 40|Homo sapiens ribosomal protein L27
protein.
Length = 40
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 25 RYKTGKNKWFFQKL 38
>BX537845-1|CAD97854.1| 1156|Homo sapiens hypothetical protein
protein.
Length = 1156
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 301 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 194
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 574 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 609
>BC043404-1|AAH43404.1| 1143|Homo sapiens non-SMC condensin II
complex, subunit G2 protein.
Length = 1143
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 301 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 194
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 574 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 609
>BC020560-1|AAH20560.1| 935|Homo sapiens NCAPG2 protein protein.
Length = 935
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 301 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 194
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 366 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 401
>AK023347-1|BAB14534.1| 698|Homo sapiens protein ( Homo sapiens
cDNA FLJ13285 fis, clone OVARC1001129. ).
Length = 698
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 301 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 194
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 129 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 164
>AK022744-1|BAB14219.1| 774|Homo sapiens protein ( Homo sapiens
cDNA FLJ12682 fis, clone NT2RM4002452. ).
Length = 774
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 301 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 194
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 205 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 240
>AK000318-1|BAA91081.1| 888|Homo sapiens protein ( Homo sapiens
cDNA FLJ20311 fis, clone HEP07319. ).
Length = 888
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 301 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 194
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 366 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 401
>AB065857-1|BAC06075.1| 315|Homo sapiens seven transmembrane helix
receptor protein.
Length = 315
Score = 29.5 bits (63), Expect = 7.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 109 FCAEFFKAEVNCITCWHQVIIVYNLHERLYL 201
FCA + A V IT H + I + LHE +YL
Sbjct: 34 FCATYAVAVVGNITLLHVIRIDHTLHEPMYL 64
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,467,111
Number of Sequences: 237096
Number of extensions: 1635585
Number of successful extensions: 7497
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7479
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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